BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315967
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69660.1 | Symbols: | TRAF-like family protein | chr1:26199... 904 0.0
> AT1G69660.1 | Symbols: | TRAF-like family protein | chr1:26199623-26200603
REVERSE LENGTH=696
Length=696
Score = 904 bits (489), Expect = 0.0
Identities = 624/691 (90%), Gaps = 2/691 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCCATACCACAAACTCAAGTGTTTGCTGAACTTCGTTTCTTTGTATACAACAAG 60
|||||||||| ||||| |||| | | |||||| ||||| || |||| ||| |||||||||
Sbjct 1 ATGGAATCCACACCACCAACTGAGGCGTTTGCGGAACTCCGCTTCTATGTCTACAACAAG 60
Query 61 AAAGAAAACAAGTATTTTACTATTCAAGATGTAGAAGTAAAGCGGTTCAATGCACTTAGA 120
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 AAAGAAAACAAGTACTTTACTATTCAAGATGTGGAAGTAAAGCGTTTCAATGCACTTAGA 120
Query 121 ATGGTGTGGGGATTGATCCAAGTTCTTCCATATGATACATTCATTAACCCTGAATTTGGA 180
||||||||||||||| | |||||||| ||||||||||||| | ||| |||||| ||||
Sbjct 121 ATGGTGTGGGGATTGCTAAAAGTTCTTTCATATGATACATTTACTAATCCTGAAAATGGA 180
Query 181 TACATCTTTGAGGGAGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACCCCTT 240
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCATCTTTGAGGGTGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACCCCTT 240
Query 241 ACTAATTGGGAAATCCTCTCTTTTGATGAGAAACTCTCTCATCCCAAGTTCTCTTGGACT 300
|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 241 ACTAATTGGGAAATTCTCTCTTTTGATGAGAAACTCTCTCCTCCCAAATTCTCTTGGAAT 300
Query 301 GTTAAGAGTTTTTCTGACTTGAAAGAGGATGTTTACACATCAAATAAATTTTCCATGGGA 360
|||||| ||||||||| |||||||||||||||||||||||||| |||| | ||||||||
Sbjct 301 CTTAAGAATTTTTCTGAGTTGAAAGAGGATGTTTACACATCAAACAAATATCCCATGGGA 360
Query 361 GGAAAGGAATGGATTCTAAAGCTGTATCCAAAGGGTGACTCTCCAGCAAATGGCAAATAT 420
|||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 361 GGAAAGGAATGGGTTCTAAAGCTGTATCCAAAGGGAAACTCTAGAGCAGATGGCAAATAT 420
Query 421 TTATCCCTTTATCTGCATTTAGCTGATAGTGAAACACTAAAACCAGATGAGAAGGTTTTC 480
|||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 421 TTATCCCTATATGTGCATTTAGCTGATAGTGAAACACTAAAATCAGATGAGAAGAATTTC 480
Query 481 AAGCAAGGACATGTGCGAGTTCTTAACCCGA-TTGGATCTAATCACGTGGAAGGCCAATA 539
||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||
Sbjct 481 AAGCAAGGACATGTGCGAGTTCTTAACCC-ACTTGGATCTAATCACGTCGAAGTACAATC 539
Query 540 TAGCCGTTGGCACAAGGAACCAGGCAAGGGTTGGGGTTGGGATCAGTTTATGTCTTTAGC 599
||| | ||| |||||||| || ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 540 GAGCTGCTGGTACAAGGAATCAAGCAGGGGTTGGGGTTGGGATCACTTTCTGTCTATAGC 599
Query 600 TGATCTTCGGAAGACCTACTTGGACAAAGAAGATGCGTTGAATGTTGAGGTCGAATTCAA 659
| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 TAATCTTCGGAAGACTTACTTGGACAAAGAAGATGCGTTGAATGTTGAAATCGAATTCAA 659
Query 660 AGTTGTTTCTGCTACCAAATATTCTCCCATT 690
|||||||||||| ||||| ||||||||||||
Sbjct 660 AGTTGTTTCTGCAACCAAGTATTCTCCCATT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5