BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315973
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-2... 1280 0.0
AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant... 676 0.0
AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-2... 523 9e-148
> AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-26228580
FORWARD LENGTH=1115
Length=1115
Score = 1280 bits (693), Expect = 0.0
Identities = 804/859 (94%), Gaps = 2/859 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAACAAGACTTAACTCTTCTTGCCACTTTCCATCGAGCACAAGACTTTATTTT 60
||||||||||||||||||||| | ||||||||||||||| ||||||||||||| | ||
Sbjct 97 ATGGCTACAACAAGACTTAACCCCTCTTGCCACTTTCCAGCGAGCACAAGACTCTCTTGC 156
Query 61 GAGAGCTATCTAGGTCTGAGAACGACCGCGAGGATTAGTTATGCACGAACCCTAACCGCT 120
||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 157 GAGAGCTATCTCGGTCTGAGAACGACCGGGAGGATTAGTTATGCCCGAACCCTAACTGCT 216
Query 121 CCACGTGGCTATCTTGCTGTAAAAGCAAACGGTGGTCAAGCTTCGGTGGTGACTGCGGCG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 217 CCACGTGGCTATCTTGCTGTAAAAGCAAACGGTGGTCAAGCTTCCGTGGTGACTGCGGCG 276
Query 181 GCTATAATGGAGAAGCAACAAAAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAAGAG 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 277 GCTATAACGGAGAAGCAACAAAAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAG 336
Query 241 ATGAGGTTTGTGGCAATGAGATTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAA 300
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATGAGATTCGTGGCGATGAGATTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAA 396
Query 301 TCTAAATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAACCAACGGTGGAAGGATACTTA 360
|||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 397 TCTAGATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAGCCGACTGTGGAAGGATACTTA 456
Query 361 CAGTTTCTTGTGGATAGTAAGTTGGTTTACGACACACTTGAGGGGATCATCGA-CGATTC 419
|| |||||||||||||||||||||||||||||||| ||||| |||||||| || || ||
Sbjct 457 CATTTTCTTGTGGATAGTAAGTTGGTTTACGACACGCTTGAAGGGATCATTGATGGA-TC 515
Query 420 CAATTTCCCAACTTATGCCGGTTTCAAGAATACGGGATTGGAAAGAGCAGAGAGTTTGCG 479
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 516 CAATTTCCCAACTTATGCTGGTTTCAAGAACACGGGATTAGAAAGAGCAGAGAGTTTGCG 575
Query 480 GAAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAAATTCCAGAGCCGATGGCTCCTGG 539
||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 576 GAAAGATTTGGAGTGGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAATGGCTCCTGG 635
Query 540 TAAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAACGATCCTCAAGCATTCATTTG 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 636 TAAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAATGATCCTCAAGCATTCATTTG 695
Query 600 TCACTTCTACAACATTTACTTTGCTCATAGTGCCGGTGGCCAAATGATTGGAACTAAGGT 659
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 696 TCACTTCTACAACATTTACTTTGCTCATAGCGCCGGTGGCCAGATGATTGGAACAAAGGT 755
Query 660 ATCTGAGAAGATACTCGATGATAAAGAACTCGAGTTCTATAATTGGGACGGTCATCTTTC 719
|||| |||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 756 ATCTAAGAAGATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTC 815
Query 720 TCAATTGTTGCAGAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTGTTGGACAAGAGA 779
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 816 TCAGTTGTTGCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTGGTGGACAAGAGA 875
Query 780 AGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGTTCAAGTTTTCCGGGGAGATTCT 839
||| |||| |||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 876 AGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGATTCT 935
Query 840 TCGTCTTATATTGTCCTGA 858
||| || ||||||||||||
Sbjct 936 TCGACTCATATTGTCCTGA 954
> AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant
haem oxygenase (decyclizing) family protein | chr2:11341684-11343572
FORWARD LENGTH=1159
Length=1159
Score = 676 bits (366), Expect = 0.0
Identities = 579/680 (85%), Gaps = 22/680 (3%)
Strand=Plus/Plus
Query 190 GAGAAGCAACAA-AAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAAGAGATGAGGTT 248
||||||| | || |||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 313 GAGAAGC-AGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTT 371
Query 249 TGTGGCAATGAGA-TTGCATACGAAAGATCAAGC-AAGGGAAGGAGAAAAAGA-ATCTAA 305
|||||| |||||| || ||||| ||||||||||| || |||||| || ||||| | ||||
Sbjct 372 TGTGGCTATGAGACTT-CATACTAAAGATCAAGCTAA-GGAAGGTGAGAAAGAGA-CTAA 428
Query 306 ATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAACCAACGGTGGAAGGATACTTACA-GT 364
|||| |||||| |||| || || ||||||||||| || || ||||| ||||| | ||
Sbjct 429 ATCTATTGAGGAACGTCCTGTTGCTAAATGGGAACCTACTGTTGAAGGTTACTT-GAGGT 487
Query 365 TTCTTGTGGATAGTAAGTTGGTTTACGACACACTTGAGGGGATCA-TCGACGATTCCAAT 423
|||||||||||||||| |||||||| || || ||||| ||| | || | || ||||||
Sbjct 488 TTCTTGTGGATAGTAAATTGGTTTATGATACTCTTGAACTGATTATTC-AAGACTCCAAT 546
Query 424 TTCCCAACTTATGCCG-GTTTCAAGAATACGGGATTGGAAAGAGCAGAG-AGTT-TGCGG 480
|||||||||||||||| | |||||||| ||||| |||||||||| ||| | || | |
Sbjct 547 TTCCCAACTTATGCCGAG-TTCAAGAACACGGGGCTGGAAAGAGCGGAGAAATTAT-C-C 603
Query 481 AAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAAATTCCAGAGCCGATGGCTCCTGGT 540
| ||||||||| |||||||||||||||||||| || |||||||| || | |||||||||
Sbjct 604 ACGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGT 663
Query 541 AAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAACGATCCTCAAGCATTCATTTGT 600
|||||||||||| | |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 664 AAAACATATTCTCAATATTTAAAGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGT 723
Query 601 CACTTCTACAACATTTACTTTGCTCATAGTGCCGGTGGCCAAATGATTGGAACTAAGGTA 660
|||||||||||||| ||||||||||||||||| ||||| | ||||||||| | |||||
Sbjct 724 CACTTCTACAACATCTACTTTGCTCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTG 783
Query 661 TCTGAGAAGATACTCGATGATAAAGAACTCGAGTTCTATAATTGGGACGGTC-ATCTTTC 719
| ||| |||||||||| ||||||||||||||||||| || |||||||| | | |||||
Sbjct 784 GCAGAGCGGATACTCGATAATAAAGAACTCGAGTTCTACAAATGGGACGG-CGAACTTTC 842
Query 720 TCAATTGTTGCAGAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGT-GTTGGACAAGAG 778
||||||||||||||| || ||| | ||||||||||| ||||||||| || |||| ||||
Sbjct 843 TCAATTGTTGCAGAACGTTAGGGAGAAACTGAACAAGGTTGCAGAGGAGT-GGACTAGAG 901
Query 779 AAGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGTTCAAGTTTTCCGGGGAGATTC 838
|||| ||||||||||||||||||||||| |||||||||||||||| ||| || ||||| |
Sbjct 902 AAGAAAAGAATCATTGTTTGGAAGAGACTGAGAAATCGTTCAAGTATTCTGGTGAGATAC 961
Query 839 TTCGTCTTATATTGTCCTGA 858
||||||| ||||||||||||
Sbjct 962 TTCGTCTCATATTGTCCTGA 981
> AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-21629996
REVERSE LENGTH=855
Length=855
Score = 523 bits (283), Expect = 9e-148
Identities = 696/886 (79%), Gaps = 66/886 (7%)
Strand=Plus/Plus
Query 1 ATGGCTACAACAAGACTTAACT-CTTCTTGCCACTTTCCAT-CGAGCACAAGACTTTATT 58
||||||||| |||||||||| | | ||||||| |||||| | | |||| ||||||| | |
Sbjct 1 ATGGCTACATCAAGACTTAA-TGCCTCTTGCCGCTTTCC-TGCAAGCAGAAGACTTGACT 58
Query 59 TTGAGAGCTATCT-AGGTCTGAGA---ACGACCGCGAGGATTAGTTATGCACGAACCCTA 114
||||||||| | | |||||||| | ||| | || || || |||| || ||| ||
Sbjct 59 GCGAGAGCTATGTCA-GTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATA 117
Query 115 ACCGCTCCACGTGGCTATCTTG-CTGTAAAAGCAAACGGTGGTCAAG-CTTCGGTGGTG- 171
||||||| ||| || |||||| | | || |||||||| | || || ||| |||||||
Sbjct 118 GCCGCTCCTCGTCGCCATCTTGTCCG-AAGAGCAAACGAAGATC-AGACTTTGGTGGTGA 175
Query 172 A--CTGCGGCGGCTA-TAATGGAGAAGCAACA-AAAGAA-GTATCCAGGAGAATC-AAAG 225
| || ||| || | | |||||||| || |||||| |||||| ||||| | || |
Sbjct 176 ATGTTGTGGCAGC-AGCAGGGGAGAAGC--CAGAAAGAAGGTATCCTCGAGAACCGAATG 232
Query 226 GGTTTTGTGGAAGAGATGAGGTTTGTGGCAATG-AGATTGCATACGAA-AGATCAAGCAA 283
|| |||||||| ||||||||||| |||| |||| | ||| || | || |||||| | ||
Sbjct 233 GG-TTTGTGGAGGAGATGAGGTTCGTGGTAATGAAAATT-CA-CCCAAGAGATCAGGTAA 289
Query 284 GGGAAGGAGAAAAAGAATCTAAATCTCCAGAGGAAGGTCCGGTGGCGAA-ATGGGAA--C 340
||| | ||||||| | | ||||| | | | || || | || || ||||
Sbjct 290 AAGAA-G-GAAAAAG----T-GA-CTCCA-ACG-A--TCTTGTATC-AACAT-GGAATTT 335
Query 341 CAACGGTGGAAGGATACTT-ACAGTTTCTTGTGGATAGTAAG-TTG-GTTTACGACACAC 397
| || | ||||| ||||| | ||||||| ||||| |||||| ||| |||| || || |
Sbjct 336 C-ACAATCGAAGGGTACTTGA-AGTTTCTCGTGGACAGTAAGCTTGTGTTT--GAGACGC 391
Query 398 TTGAGGGGATCATCGACGATTCCAATTTCCCAA-CTTATGCCGGTTTCAAGAATACGGGA 456
|||| | || || |||| || | | |||| |||||||||| |||| || |||||
Sbjct 392 TTGAACGAATTATTAACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGG 450
Query 457 TTGGAAAGAGCAGAGAGTTTGCGGAAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAA 516
|||||||| ||||||| |||| | | ||||||||| |||||||||||||||||||| ||
Sbjct 451 TTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAG 510
Query 517 ATTCCAGAGCCGATGGCTCCTGGTAAAACATATTCTGAGTATTTAAAAG-ATTTAGCAGA 575
||||||||| | |||| |||||||||| |||||||| ||||||| |||| || |||||||
Sbjct 511 ATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTT-AAAGAATATAGCAGA 569
Query 576 GAACGATCCTCAAGCATTCATTTGTCACTTCTACAACATTTACTTTGCTCATAGTGCCGG 635
||| ||||||| ||||||||| |||||||||||||||||| ||||||| ||||| || ||
Sbjct 570 GAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACATTAACTTTGCACATAGCGCTGG 629
Query 636 TGGCCAAATGATTGGAACTAAGGTATCTGAGAAGATACTCGATGATAAAGAACTCGAGTT 695
||| | ||||||||| || |||||| |||||||||||||||| ||||||||||||||||
Sbjct 630 TGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAAAGAACTCGAGTT 689
Query 696 CTATAATTGGGACGGTCATCTTTCTC-AATTGTTGCAGAATGTGAG-GCAAAAACTGAAC 753
||| || |||||||| || ||||| | ||||||||||||| ||||| | || || |||||
Sbjct 690 CTACAAATGGGACGGCCAACTTTC-CGAATTGTTGCAGAACGTGAGTG-AAGAATTGAAC 747
Query 754 AAAGTTGCAGAG-TGTTGGACAAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 812
||||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 748 AAAGTGGCTGAGTTG-TGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 806
Query 813 ATCGTTCAAGTTTTCCGGGGAGATTCTTCGT--CTTATATTGTCCT 856
|||||||||||||| |||||||| ||||| ||||| | |||||
Sbjct 807 ATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTAT-T-GTCCT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5