BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315978
Length=2517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 | chr1:26248318... 3072 0.0
> AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 | chr1:26248318-26253585
REVERSE LENGTH=2764
Length=2764
Score = 3072 bits (1663), Expect = 0.0
Identities = 2264/2549 (89%), Gaps = 61/2549 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCCGAAGCGCAAGAGAGCTAC-AAAGAAGGACG-CGAGTACCAAATCCATTCCCA 58
|||||||||||||| |||||| || | | | ||||| | | | |||||||||||||||||
Sbjct 67 ATGGCGCCGAAGCGAAAGAGACCTGCGACA-AAGGATGAC-ACTACCAAATCCATTCCCA 124
Query 59 AACCGAGGAAGAGAGCTCCTAAGCGAGCTAAAACGGTGAAAGAAGAGCCGGTGAAATTCG 118
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 125 AACCGAAGAAGAGAGCTCCTAAGCGAGCTAAGACGGTGAAAGAAGAGCCGGTGACAGTGG 184
Query 119 TGGAGGAAGGGGAAAAGTATGTTGCGAGGTTTCTCGACGAATCTATTCCAGAATCTGAAG 178
| ||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 185 TCGAGGAAGGGGAAAAGCATGTTGCGAGGTTTCTAGACGAGCCAATTCCAGAATCTGAAG 244
Query 179 CCAAGAGTACTTGGCCTGACAGATACAAACCGATT-ACGGTACAGAAACCTAAGGCTCCG 237
| |||||||| |||||||||||||||||||||||| | ||||||| |||||||||| ||
Sbjct 245 CGAAGAGTACCTGGCCTGACAGATACAAACCGATTGA-GGTACAGCCACCTAAGGCTTCG 303
Query 238 TCAAGAAACACGACGAAGGATGATGAAAAAGATAAGATCATTCGGGCTCGATGCCATTAT 297
|||||||| | |||||||||||| ||||||| | |||||||||| |||||||||||||||
Sbjct 304 TCAAGAAAGAAGACGAAGGATGACGAAAAAGTTGAGATCATTCGTGCTCGATGCCATTAT 363
Query 298 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTTAATGATGATGCTTATGTGCAG 357
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 364 AGACGTGCGATTGTTGATGAGCGTCAGATATATGAGCTGAATGATGATGCTTATGTACAG 423
Query 358 TCTGGTGAGGGAAATCAGCCCTTCGTTTGCAAAATTGTTGAAATGTTTGAAGGGGCTAAT 417
|||||||||||||| | |||||| |||| ||||| |||||||||||||||||||||||
Sbjct 424 TCTGGTGAGGGAAAGGATCCCTTCATTTGTAAAATCATTGAAATGTTTGAAGGGGCTAAT 483
Query 418 GGGAAATTGTATTTCACAGCTCGGTGGTTCTATAGAGCTGATGATACTGTAATGAAACAG 477
|||||| |||||||||| ||||||||||| |||||| || |||||||||||||||| ||
Sbjct 484 GGGAAACTGTATTTCACGGCTCGGTGGTTTTATAGACCTTCTGATACTGTAATGAAAGAG 543
Query 478 TTCAAGATTCTGATTGATG-ATAAGCGTGTGTTTTTCTCGGAGATTCGAGATACAAATGA 536
||| ||||||||| | | | | ||||||||||||||||| ||||| | ||||||||||||
Sbjct 544 TTCGAGATTCTGA-TCAAGAAAAAGCGTGTGTTTTTCTCTGAGATACAAGATACAAATGA 602
Query 537 ATTGGGATTACTTGAAAAGAAGTTGAACATTTTGATGATTCCCTT-AAGTGAAAATGCTG 595
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||
Sbjct 603 ATTGGGATTACTTGAAAAGAAGCTGAACATTTTGATGATTCCCTTGAA-TGAAAATACTA 661
Query 596 CTGGGCCTATCGCTGCAACA-AAAACCTGTGA-TTATTAT-TGCGATATGAACTATCTCT 652
| | ||||| |||||||| |||| |||||| || || | || || ||||||||| |||
Sbjct 662 AAGAGACTATCCCTGCAACAGAAAA-CTGTGACTT-TT-TCTGTGACATGAACTATTTCT 718
Query 653 TGCCTTACGATACATTTGAAGCTTTACAACAAGATACCAAAATGGCTGTAAGTGAAAGTT 712
||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||
Sbjct 719 TGCCTTACGATACATTTGAAGCTATACAACAAGAAACCATGATGGCTATAAGTGAAAGTT 778
Query 713 CAACAATATCCAGTGATACTGATGTAA-ACGAAGGAGCTGCTGCTATATCAGAGAATCAA 771
||||||||||||||||||||||| ||| | |||||||||||||| |||||||||| | |
Sbjct 779 CAACAATATCCAGTGATACTGATATAAGA-GAAGGAGCTGCTGCCATATCAGAGATTGGA 837
Query 772 GAAGGTTCTCAAGACACACG-AGTTCA-AAGAGAGACAACTTTGCTTGACCTTTACTCCG 829
||| |||||||||| ||| | || ||| || | || ||||||||||||||||||||||||
Sbjct 838 GAATGTTCTCAAGAAACA-GAAGGTCACAA-AAAGGCAACTTTGCTTGACCTTTACTCCG 895
Query 830 GCTGTGGAGCTATGTCCACAGGGTTGTGCATGGGTGCACAACTCTCTGGTTTGAACCTTG 889
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 896 GCTGTGGAGCTATGTCGACAGGGTTGTGCATGGGTGCACAACTGTCTGGTTTGAACCTCG 955
Query 890 TCACTAAATGGGCTGTTGACATGAATGCGCATGCATGTAAAAGCTTGGGGCATAACCACC 949
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 956 TCACTAAATGGGCTGTTGACATGAATGCACATGCATGTAAAAGCTTGCAGCATAACCACC 1015
Query 950 CAGAGACACACGTGAGAAACATGTCCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1009
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAGAGACAAACGTGAGAAACATGACCGCAGAAGATTTCTTGTTTCTGCTTAAGGAGTGGG 1075
Query 1010 AGAAGCTATGCATTCATTTCTCTTTGAGAAATTGTCCAAATTCAGAAGAATATGAAAACC 1069
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1076 AGAAGCTATGCATTCATTTCTCTTTGAGAAATAGTCCAAATTCAGAAGAATATGCCAACC 1135
Query 1070 TTCACGGTATGACTAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGATGATGAAG 1129
|||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 TTCACGGTTTGAATAATGTTGAGGACAATGAAGATGTCAGCGAGGAGAGTGAAAATGAAG 1195
Query 1130 ATGACGGCGAAGTTTTTACAGTGGAAAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1189
|||| || ||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1196 ATGATGGAGAAGTTTTTACTGTTGACAAGATTGTTGGTATTTCCTTCGGAGTCCCTAAAA 1255
Query 1190 AGTTACAGAAACGTGGTCTTTATTTGAAGGTACGATGGTTGAATTACGATGATTCCCATG 1249
||||| ||||||||| ||||||||||||||| | ||| ||||||| |||||||| ||||
Sbjct 1256 AGTTATTGAAACGTGGACTTTATTTGAAGGTAAGGTGGCTGAATTATGATGATTCTCATG 1315
Query 1250 ATACCTGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGA-AAAGATA-AAGGAGTAT-G 1306
|||| |||||||||||||||||||||||||||||||||| ||| || ||| ||| | |
Sbjct 1316 ATACATGGGAGCCTATTGAAGGACTCAGTAATTGCCGGGGTAAA-ATTGAAG-AGT-TCG 1372
Query 1307 TCAAACTTGGATATGAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGTG 1366
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1373 TTAAACTTGGATATAAATCTGGCATCCTTCCGTTACCAGGAGGTGTTGATGTTGTCTGCG 1432
Query 1367 GCGGGCCGCCATGCCAAGGAATCAGTGGTCATAACCGCTTCAGGAACTTATTGGAGCCTC 1426
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1433 GTGGGCCACCATGCCAAGGAATCAGTGGTCACAACCGCTTCAGGAACTTATTGGACCCTC 1492
Query 1427 TAAAAGATGAGAAAAACAAGCAGCTTCTTGTT-TATATGAACATTGTGGAGT-TTCTAAA 1484
|| ||||| ||||||||||||||||| ||| | |||||||||||||| || | || | ||
Sbjct 1493 TAGAAGATCAGAAAAACAAGCAGCTT-TTGGTGTATATGAACATTGTAGAATATT-TGAA 1550
Query 1485 GCCGAAATACGTTTTGATGGAGAATGTGGTAGACATGCTTAAGATGTCTGAGGGCTATCT 1544
||| || | |||||||||||| || || || |||||||| |||||| || ||||||||||
Sbjct 1551 GCCTAAGTTCGTTTTGATGGAAAACGTCGTTGACATGCTGAAGATGGCTAAGGGCTATCT 1610
Query 1545 TGCGCG-TTATGCTGTGGGAAGGCTTATCCAAATGAATTACCAAGTCAGGA-TGGGAATG 1602
||| || || |||||| ||| | ||| | || |||||||||||||| |||| ||| ||||
Sbjct 1611 TGCACGGTT-TGCTGTTGGACGCCTTCTACAGATGAATTACCAAGTGAGGAATGG-AATG 1668
Query 1603 ATGGCGGCAGGAGCATATGGTCTTGCTCAGTTCCGCTTGCGGTTCTT-CTTATGGGGTGC 1661
||||| || ||||| ||||| ||||||||||| || ||| ||||||| || |||||||||
Sbjct 1669 ATGGCAGCTGGAGCTTATGGGCTTGCTCAGTTTCGTTTGAGGTTCTTTCT-ATGGGGTGC 1727
Query 1662 ACTCCCTAGC-ATGATGATTCCTCAGTTCCCACTTCCAACTCATGATTTAGTACAGAGAG 1720
||||||||| | ||| ||||| ||||||||||||||||| |||||| |||| || ||||
Sbjct 1728 ACTCCCTAGTGA-GATAATTCCGCAGTTCCCACTTCCAACACATGATCTAGTTCATAGAG 1786
Query 1721 GAAATATTGTTAAGGAGTTTCAGGGAAACACAGTAGCCTATGATGAAGGCCACACTGTGA 1780
|||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1787 GAAATATTGTCAAGGAGTTTCAGGGAAACATAGTAGCCTATGATGAAGGACATACTGTGA 1846
Query 1781 AGTTAGCAGACAAGCTTTTACTTAGA-G-ATGTGATTTCTGATCTTCCCGCTGTTGACAA 1838
||||||||||||||||||| || || | ||||||||||||||||||| || |||| |||
Sbjct 1847 AGTTAGCAGACAAGCTTTTG-TT-GAAGGATGTGATTTCTGATCTTCCTGCAGTTGCCAA 1904
Query 1839 CAGTGAACAAAGGGACGAGAT-ACCATATGACCAAGATCCTGTGACACCATTTCAACAGT 1897
||||||| |||| |||||||| || ||||||| ||||||| || ||||||||| |||
Sbjct 1905 CAGTGAAAAAAGAGACGAGATTAC-ATATGACAAAGATCCCACAACGCCATTTCAAAAGT 1963
Query 1898 TCATCAGATTAAGAAAGGATGAAGCGTTAGGTTCACTAA-CTAAGTCCAAGTCCAAAAAG 1956
|||||||||| |||||||||||||||| |||||||| || | ||||||||||||||||||
Sbjct 1964 TCATCAGATTGAGAAAGGATGAAGCGTCAGGTTCAC-AATCAAAGTCCAAGTCCAAAAAG 2022
Query 1957 CATGTCTTGTACGATCATCATCCC-CTGAATCTGAATATTAATGATTATCAACGAGTTTG 2015
|||||||| || |||||||| ||| || ||||| ||||| ||||| ||| |||| |||||
Sbjct 2023 CATGTCTTATATGATCATCA-CCCTCTTAATCTTAATATAAATGACTATGAACGGGTTTG 2081
Query 2016 T-AGAGTCCCCAAGAGGAAGGGAGCGAATTTCAGGGACTTTCCTGGTGTTATTGTTGGAC 2074
| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2082 TCAG-GTCCCCAAGAGAAAGGGAGCGAATTTTAGGGACTTTCCTGGTGTTATTGTTGGAC 2140
Query 2075 CCGGTAATGTAGTCCACTTGGATGAGG-ATATGAAAA--TCATGCTTGAATCTGGAAAA- 2130
| |||||||||||| | ||||| |||| | | |||| ||| |||||||||||||||
Sbjct 2141 CTGGTAATGTAGTCAAGTTGGAAGAGGGAAAGGAAAGGGTCAAACTTGAATCTGGAAAAA 2200
Query 2131 CAATTGGTTCCCAATTATGCATTGACGTTTGTCGATGGGACATCGTCCAAACCTTTTGGT 2190
|| ||||||||| ||||||| || || | ||||||||||| ||| | |||||||||||||
Sbjct 2201 CA-TTGGTTCCCGATTATGCCTTAACATATGTCGATGGGAAATCATGCAAACCTTTTGGT 2259
Query 2191 CGCCTTTGGTGGGACGAGATAGTCCCTACTGTTGTCACACGTGCAGAACCGCACAACCAG 2250
|| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||||
Sbjct 2260 CGTCTTTGGTGGGACGAAATTGTCCCCACTGTTGTCACACGGGCAGAACCCCACAACCAG 2319
Query 2251 GTGATCATTCATCCA-ACGCAAGATCGTGTTTTATCCATTCGAGAAAATGCCAGACTCCA 2309
||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 2320 GTGATCATTCATCCAGA-GCAAAATCGGGTTTTATCCATTCGAGAAAATGCGAGACTCCA 2378
Query 2310 GGGCTTTCCTGATGACTACAAACTCTTTGGACCAACGAAACAAAAGTATATCCAAGTCGG 2369
||||||||||||||||||||||||||||| ||| | ||||| ||||| || ||||| ||
Sbjct 2379 AGGCTTTCCTGATGACTACAAACTCTTTGGCCCACCCAAACAGAAGTACATTCAAGTAGG 2438
Query 2370 TAACGCGGTAGCTGTGCCAGTAGCAAAGGCCCTTGGATATGCTTTGGGAATC-GCTTTCC 2428
|||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 2439 TAACGCTGTAGCTGTGCCAGTAGCGAAGGCCCTTGGATATGCTTTGGGAA-CAGCTTTCC 2497
Query 2429 AGGGTCTCGCAGATGGGAAGGATCCACTTCTTACTCTTCCTGAAGGTTTTGCATTCATGA 2488
|||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2498 AGGGACTCGCAGTTGGGAAAGATCCACTTCTTACTCTGCCTGAAGGTTTTGCATTCATGA 2557
Query 2489 AGCCAAATCTTCCTTCCGAGCTTGCATGA 2517
|||||| ||||||||||||||||||||||
Sbjct 2558 AGCCAACTCTTCCTTCCGAGCTTGCATGA 2586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124915688070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5