BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315981
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein... 261 4e-69
AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating en... 235 3e-61
> AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein
1 | chr1:4927011-4928690 REVERSE LENGTH=995
Length=995
Score = 261 bits (141), Expect = 4e-69
Identities = 341/434 (79%), Gaps = 27/434 (6%)
Strand=Plus/Plus
Query 1 ATGTCAACTCCAGCAAGGAAGAGGCTT-ATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 59
||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 254 ATGTCGACGCCAGCAAGGAAGAGG-TTAATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 312
Query 60 TCCTGCTGGAATCAATGGTGATTCTCAAGATAACAACATCT-TACTCTGGAACGCCGTTA 118
||||| || || | ||||| | | || || |||||||| | | |||||||| || || |
Sbjct 313 ACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACAT-TATGCTCTGGAATGCTGTCA 371
Query 119 TCTTTGGTCCGGATGATACACTTTGGGATGGAGGTACAATT-AAAGTTTGTATTATGACC 177
| ||||| || ||||| |||| |||||||||||||| || ||| | | | | | |
Sbjct 372 TATTTGGGCCTGATGACACACCATGGGATGGAGGTACT-TTCAAACTCTC-ACT--G-CA 426
Query 178 CTTCAATTTACAGAGGATTATCCAAACAAGCCACCGACTGTTCGCTTTGT-TACTCGGAT 236
||| | | | || ||||||| || || ||||| || ||||| ||||| | | |||||
Sbjct 427 GTTC--TCTG-A-AG-ATTATCCCAATAAACCACCAACAGTTCGGTTTGTGT-CACGGAT 480
Query 237 GTTTCACCCAAATATCTATGCAGATGGAAGTATTTGTCTTG-ACAT-CTTACAGAATCAG 294
|||||| || ||||| ||||||||||| ||||| || |||| |||| || ||| || |||
Sbjct 481 GTTTCATCCTAATATTTATGCAGATGGGAGTATCTG-CTTGGACATTCT-ACAAAACCAG 538
Query 295 TGGAGTCCTATTTATGATGTTGCAGCAATTCTTACATCTATCCAGTCACT--CTTCTGTG 352
|||||||| || ||||||||||| || || ||||| || |||||||| || || |||||
Sbjct 539 TGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTC-CTTGCT-CTGTG 596
Query 353 ATCCC-AGCCCAAACTCACCTGCAAACTCAGAAGCTGCCCGCTTATTCAGCGAAAACAAG 411
| ||| | || || || ||||||||||| |||||||| || | | |||||||| ||||
Sbjct 597 A-CCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAG 655
Query 412 CGAGAATACAACAG 425
|| || ||||||||
Sbjct 656 CGCGAGTACAACAG 669
> AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating
enzyme 2 | chr2:773684-775371 FORWARD LENGTH=934
Length=934
Score = 235 bits (127), Expect = 3e-61
Identities = 333/431 (77%), Gaps = 19/431 (4%)
Strand=Plus/Plus
Query 1 ATGTCAACTCCAGCAAGGAAGAGGCTT-ATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 59
||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 254 ATGTCGACTCCAGCGAGGAAGA-GATTGATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 312
Query 60 TCCTGCTGGAATCAATGGTGATTCTCAAGATAACAACATCTTACTCTGGAACGCCGTTAT 119
||||| ||||| | ||||| | | ||||| ||||| ||| | | ||||| || |||||
Sbjct 313 ACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTTAT 372
Query 120 CTTTGGTCCGGATGATACACTTTGGGATGGAGGTACAATT-AAAGTTTGTATTATGACCC 178
|| || || |||||||| | ||||||||||||||| || ||| || || | |
Sbjct 373 ATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACT-TTCAAA-TT-GTC--A---C-- 422
Query 179 TTCAATTTACAGAGGATTATCCAAACAAGCCACCGACTGTTCGCTTTGTTACTCGGATGT 238
| || ||| | || ||||||||||| || ||||| || || || |||||| | |||||||
Sbjct 423 TGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGT 482
Query 239 TTCACCCAAATATCTATGCAGATGGAAGTATTTGTCTTG-ACAT-CTTACAGAATCAGTG 296
| || ||||| || ||||| ||||| ||||| || |||| |||| || || || || ||
Sbjct 483 TCCATCCAAACATTTATGCTGATGGGAGTATATG-CTTGGACATTCTC-CAAAACCAATG 540
Query 297 GAGTCCTATTTATGATGTTGCAGCAATTCTTACATCTATCCAGTCACT-CTTCTGTGATC 355
|||||| || || ||||| || || || || || || || |||||| | || |||||||
Sbjct 541 GAGTCCAATATACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTA-TGTGATC 599
Query 356 CCAGCCCAAACTCACCTGCAAACTCAGAAGCTGCCCGCTTATTCAGCGAAAACAAGCGAG 415
| | || || || |||||||| || |||||||| || | ||||| |||| |||||| |
Sbjct 600 CTAATCCGAATTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCG 659
Query 416 AATACAACAGA 426
| |||||||||
Sbjct 660 AGTACAACAGA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5