BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315984
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69825.1 | Symbols: | Encodes a defensin-like (DEFL) family... 327 2e-89
> AT1G69825.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr1:26286496-26286929 FORWARD LENGTH=222
Length=222
Score = 327 bits (177), Expect = 2e-89
Identities = 207/222 (93%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCTAACAAAGTCTCATTCTTCTTGATTCTTTTTCTATGTGTGCTCTCAACCGCA 60
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||
Sbjct 1 ATGGCATCTAACAAAGTCTCATTCATCTTTATTCTTTTTCTATGTGTTCTCTCAACAGCA 60
Query 61 GATTTTGGAGAAGCACAAAACCCAACAGGAAGAAAATGCGAAGATCCAAACGGTGTAGAC 120
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAGTTTGGAGAAGCACAAAACCCAAGGGGAAGAAAATGCGAAGATCCAAACGGTGTAGAC 120
Query 121 AAAAAAGCGGAATGTTATATTTACTGTAATGAACAAGGTTTTCTCGGGGGTTCTTGTCAA 180
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAAAGCGAAATGCTATATTTACTGTAATGAACAAGGTTTTCTCGGGGGTTCTTGTCAA 180
Query 181 GGCTACAAAAATCATTATCTGTGTGAATGTTATGTAGGATAA 222
||||||| ||||| ||| ||||||| |||||||||||||||
Sbjct 181 GGCTACACCAATCACTATATGTGTGAGTGTTATGTAGGATAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5