BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315985
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69828.1 | Symbols: | Defensin-like (DEFL) family protein |... 340 2e-93
> AT1G69828.1 | Symbols: | Defensin-like (DEFL) family protein
| chr1:26287522-26287948 FORWARD LENGTH=225
Length=225
Score = 340 bits (184), Expect = 2e-93
Identities = 213/226 (94%), Gaps = 5/226 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTCAGGCGGA 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 ATGGCATCTAACAAAGTCTCATTTTTCTTGGTTCTTTGTCTATGTATTCTCTTAGCCGGA 60
Query 61 GAGTGTATAGAATCACCAATTTTTACCGGAAACAAATGCTCCGATCCAACCGGCTTGGAC 120
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 61 GAGTGTATAGAATCACCAATTTTCACCGGAAACAAATGCTCAGATCCAACCGGCATGGAC 120
Query 121 AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCTGGTGGTTCTTGTGA- 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 121 AAAGATGGAAAATGTCTTGATTACTGTCATGCTCAAGGTTATCCCGGTGGTTCTTGT-AT 179
Query 180 AGGCTTCACCGATCA---TTATATGTGTGTATGTAAAGTAGGATAA 222
|||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 180 AGGCTTCATCGATCAAGGTTATATGTGTGTATGTAAAGTAGGATAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5