BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315987
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69840.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1461 0.0
> AT1G69840.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr1:26293660-26295834 REVERSE
LENGTH=1274
Length=1274
Score = 1461 bits (791), Expect = 0.0
Identities = 837/860 (97%), Gaps = 0/860 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCAAGCTTTGGGTTGTATTCAAGTTGATCAATCGAATGTAGCAATCAAAGAGACT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 142 ATGGGTCAAGCTTTGGGTTGTATTCAAGTTGATCAGTCGAATGTAGCAATCAAAGAGACT 201
Query 61 TTTGGGAAATTCGACGAAGTTCTTGAGCCGGGTTGTCACTGTTTGCCATGGTGTTTGGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTTGGGAAATTCGACGAAGTTCTTGAGCCGGGTTGTCACTGTTTGCCATGGTGTTTGGGA 261
Query 121 AGTCAAGTCGCTGGTCACCTTTCCTTACGTGTTCAACAGCTCGATGTTCGCTGCGAGACA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 262 AGTCAAGTCGCTGGTCACCTTTCTTTACGTGTTCAACAGCTCGATGTTCGCTGCGAGACA 321
Query 181 AAAACTAAGGATAATGTGTTTGTCACGGTTGTTGCTTCCATTCAATACCGTGCCTTAGCA 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AAGACTAAGGATAATGTGTTTGTCACGGTTGTTGCTTCCATTCAATACCGTGCCTTAGCG 381
Query 241 GAGAGTGCTCAAGATGCTTTTTACAAGCTCAGCAACACAAGGAATCAGATTCAAGCTTAT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 GAGAGTGCTCAAGATGCTTTTTACAAGCTCAGCAACACGAGGAATCAGATTCAAGCTTAT 441
Query 301 GTCTTTGATGTGATCCGAGCAAGTGTACCTAAGCTGGATCTTGACTCAACCTTTGAGCAA 360
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 442 GTCTTTGATGTGATCCGAGCAAGTGTACCTAAGCTGGATCTAGACTCTACCTTTGAGCAA 501
Query 361 AAGAATGACATTGCAAAAACCGTTGAGACTGAGCTTGAAAAGGCTATGTCGCATTACGGG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 502 AAGAATGACATTGCAAAAACCGTTGAGACTGAGCTCGAAAAGGCTATGTCGCATTACGGG 561
Query 421 TATGAGATTGTTCAGACACTGATTGTGGATATCGAGCCTGATGTGCACGTCAAGAGGGCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TATGAGATTGTTCAGACACTGATTGTGGATATCGAGCCTGATGTGCACGTCAAGAGGGCA 621
Query 481 ATGAATGAGATCAATGCCGCTTCTAGAATGAGAGAGGCAGCGAGTGAGAAAGCTGAGGCA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATGAATGAGATCAATGCTGCTTCTAGAATGAGAGAGGCAGCGAGTGAGAAAGCTGAGGCA 681
Query 541 GAGAAGATTCTGCAGATTAAGAGAGCTGAGGGAGAAGCTGAATCGAAATACCTTTCAGGT 600
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 682 GAGAAGATTCTGCAGATCAAGCGTGCTGAGGGAGAAGCTGAATCGAAATACCTTTCAGGT 741
Query 601 ATGGGTATAGCCCGTCAGAGACAAGCCATTGTTGACGGTCTGAGAAACAGCGTGCTCGCC 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 742 ATGGGTATAGCCCGTCAGAGACAAGCCATTGTGGACGGTCTGAGAAACAGCGTCCTCGCC 801
Query 661 TTCTCCGAGTCTGTTCCAGGGACGTCTTCCAAAGATGTGATGGATATGGTTCTGGTTACT 720
|||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||
Sbjct 802 TTCTCCGAGTCTGTTCCAGGAACATCTTCCAAAGACGTGATGGATATGGTTCTTGTGACT 861
Query 721 CAGTACTTCGACACATTGAAGGAAATTGGTGCTTCTTCGAAGTCAAACTCGGTGTTCATA 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CAGTACTTTGACACATTGAAGGAAATTGGTGCTTCTTCGAAGTCAAACTCGGTGTTCATA 921
Query 781 CCGCACGGTCCAGGTGCTGTTAAGGACATTGCTTCACAGATCAGGGATGGTCTTCTTCAG 840
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 922 CCGCACGGTCCAGGCGCTGTTAGGGACATTGCTTCACAGATCAGGGATGGTCTTCTTCAG 981
Query 841 GGTAACTCTGTTGCTGAGTA 860
|||||||||| |||||||||
Sbjct 982 GGTAACTCTGCTGCTGAGTA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5