BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316003
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70110.1 | Symbols: | Concanavalin A-like lectin protein ki... 1341 0.0
AT1G70130.1 | Symbols: | Concanavalin A-like lectin protein ki... 396 5e-109
> AT1G70110.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr1:26406238-26408323 REVERSE LENGTH=2001
Length=2001
Score = 1341 bits (726), Expect = 0.0
Identities = 1129/1318 (86%), Gaps = 49/1318 (4%)
Strand=Plus/Plus
Query 337 AGCAACGAT-GGAGATCCCAAAAATCATATAATAGCGGTTGAGCTCGATACCGTACAAG- 394
|||||| || |||||||| |||||||||||| |||| ||||||||||||| | || |||
Sbjct 373 AGCAAC-ATGGGAGATCCAAAAAATCATATAGTAGCTGTTGAGCTCGATA-C-TA-AAGT 428
Query 395 -G-CCCTGAAGTT-TATGAC-ATGAATGCCAACCATGTTGGTATTGACATAAATACCATA 450
| || || || | ||| | | |||| ||||||||||| ||||| || ||||| ||
Sbjct 429 TGACCAACAA-TTCGAGGACAAAG-ATGCTAACCATGTTGGCATTGATATCAATACTTTA 486
Query 451 GTTTCAGAAATAGCTGCTTCAGCAGGTTATTACAAGGATGATGGTAGATTT--ATAGATC 508
|||||||| | || ||||| ||| |||||||||| |||| | |||| |||| | || ||
Sbjct 487 GTTTCAGATACAGTTGCTTTAGCGGGTTATTACATGGATAACGGTACATTTCGA-AG-TC 544
Query 509 TCTTGCTTGCCAGTGGAGACCCTATGCAAGTGTGGATTGAATATGATAGCAAACAGAGAC 568
|||||||| ||||||| | ||||||||| | |||||||| ||||| || ||||||| ||
Sbjct 545 TCTTGCTTAACAGTGGACAACCTATGCAAATCTGGATTGAGTATGACAGTAAACAGAAAC 604
Query 569 AGCTTAACGTCACACTTCATCCTATTCGTGTCCCTAAGCCAAAGATTCCACTCCTTTCTC 628
|| |||| ||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 605 AGATTAATGTCACACTTCATCCTCTTTATGTCCCTAAGCCAAAGATTCCACTTCTTTCTC 664
Query 629 TTCAAAAGGATCTTTCTCCCTATTTGCTTGAGTTTATGTACCTTGGATTTTCCTCATCCA 688
|| |||||||||||||||| ||||||||||| ||||||| ||||||| | ||| | |
Sbjct 665 TTGAAAAGGATCTTTCTCCATATTTGCTTGAACTTATGTATGTTGGATTCACTTCAACTA 724
Query 689 C-GGGTACATTAACTGCATCTCACTATATATTGGGTTGGACGTTCAAGATTAATGGGACG 747
| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 725 CAGGGGAC-CTAACTGCATCTCACTATATATTGGGATGGACGTTCAAGATGAATGGGACT 783
Query 748 GCTCCAGCTATAGACCCCTCTCGACTT-CCAAACGTTCCCCGTTTTAATCAGCCATGGAT 806
|||||| ||||||||||||||| ||| ||||| |||| |||| |||||||||||||||
Sbjct 784 ACTCCAGATATAGACCCCTCTCGCCTTCCCAAA-ATTCCTCGTTATAATCAGCCATGGAT 842
Query 807 CCGGAGTCTGAAGGGGGTTTTAACGATCAGTTTGACTATATCAGGCGTCGCCATACTCAT 866
|| ||||| || ||| |||| || |||||||| ||| ||||||| ||| |||||||||
Sbjct 843 CCAGAGTCCAAATGGGATTTTGACAATCAGTTTAACTGTATCAGGAGTCATCATACTCAT 902
Query 867 CATCTTGGGTCTCAGCATATGGTTTTTTCTGAAGAGGAAGAAGCTACTGGAAGTTCTTGA 926
|||||| ||||||| ||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 903 TATCTTGAGTCTCAGTTTATGGCTTTTCCTGAAGAGGAAGAAGCTATTGGAAGTTCTTGA 962
Query 927 GGACTGGGAGGTGCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTACACACTGCAAC 986
||||||||| || ||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 963 GGACTGGGAAGTTCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTGCATATTGCTAC 1022
Query 987 AAAGGGTTTCAAGAATACAGAGCTTCTCGGTCAAGGAGGATTTGGGAAAGTCTATAAGGG 1046
||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||||| ||
Sbjct 1023 AAAGGGTTTCAAGGATACTGAGGTTCTTGGTAAAGGAGGATTTGGGAAAGTCTATAAAGG 1082
Query 1047 TACTTTACCAGTGTCCAACGTAGAGATCGCTGTGAAGA-GAGTTTCTCATGATTCAAGGC 1105
|||||||||||||||||||||||||| || ||||||| | ||||||||||| ||||| |
Sbjct 1083 AACTTTACCAGTGTCCAACGTAGAGATAGCGGTGAAGATG-GTTTCTCATGACTCAAGAC 1141
Query 1106 AGGGCATGAGAGGGTTCATTGCTGAGATCGCAACCATTGGGCGTATCAGACATCCCAACT 1165
| || ||||||| ||| ||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1142 AAGGAATGAGAGAGTTTATTGCTGAGATTGCAACCATTGGGCGTCTCAGACATCCTAACT 1201
Query 1166 TAGTTCGGCTCCAAGGTTACTGCAGACACAAAGGTGAACTCTACTTGGTATATGATTGTA 1225
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1202 TAGTTCGGCTTCAAGGCTACTGCAGACACAAAGGTGAACTCTACTTGGTGTATGATTGTA 1261
Query 1226 TGCCCAAAGGCAGCCTTGATAAGTTCCTTTACGACCAACAGACTGGTAATCTTGATTGGT 1285
|| ||||||| || |||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1262 TGGCCAAAGGAAGTCTTGATAAGTTCCTTTACCATCAACAGACTGGGAATCTTGATTGGT 1321
Query 1286 CACAGAGATTTAAGATCATCAAAGACGTAGCTTCTGGGCTTTGTTTTTTGCACCAACAAT 1345
|||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 1322 CACAGAGATTCAAGATCATCAAAGACGTAGCTTCTGGACTTTATTATTTGCACCAACAAT 1381
Query 1346 GGGTGCAGGTGATTATCCACAGGGATATTAAACCAGCCAACATCCTTCTTAACGCTAATA 1405
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1382 GGGTGCAGGTCATTATCCACAGGGATATTAAACCAGCCAACATCCTTCTTGACGCTAATA 1441
Query 1406 TGAATGCTAAACTTGGTGATTTTGGTCTCGCGAAGCTCTG-GATCAT-GG---GAT--T- 1457
||||||||||||||||||| |||||||||||||||||||| |||||| || ||| |
Sbjct 1442 TGAATGCTAAACTTGGTGACTTTGGTCTCGCGAAGCTCTGCGATCATGGGACTGATCCTC 1501
Query 1458 -GA--TC-C---T--CA-G-AC-C-T--CT-CATGT-GGC--AGCTCTCAAGAACAGGAA 1498
|| || | | || | || | | | || | | ||||||||||||||||||
Sbjct 1502 AGACCTCTCATGTGGCAGGTACACTTGGGTATATTTCACCTGAGCTCTCAAGAACAGGAA 1561
Query 1499 AGGCAAGTACAAGCTCAGATGTATTTGCATTCGGAGTGGTTATGCTAGAGATCGCATGTG 1558
||||||||||||| |||||||||||||| || ||| | || ||||||||||| || || |
Sbjct 1562 AGGCAAGTACAAGATCAGATGTATTTGCGTTTGGAATAGTGATGCTAGAGATTGCTTGCG 1621
Query 1559 GACGAAAGCCCATATTGCCACGAGCACCGCAAAGCGAGATGGTACTGACTGATTGGGT 1616
| ||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 1622 GGCGAAAACCCATATTGCCACGAGCATCACAAAGAGAGATGGTACTGACTGATTGGGT 1679
Score = 429 bits (232), Expect = 5e-119
Identities = 270/289 (93%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 1614 GGTTCTTGATCATAAGATTGGGCAGGACTATGTCGAGGAGCAAGTGGCATTTGTTCTAAA 1673
||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| ||
Sbjct 1713 GGTTCTTGATCATAAGATTGGTCAGGAATATGTTGAGGAGCAAGCGGCACTTGTTCTGAA 1772
Query 1674 ACTCGGCTTACTCTGTTCTCATCCAGTACCAGCCATCAGACCAAACATGTCTAGCGTCAT 1733
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1773 ACTTGGCTTATTCTGTTCTCATCCAGTAGCAGCCATCAGACCAAACATGTCTAGCGTCAT 1832
Query 1734 TCAATTCTTGGACAGTGTGGCTCAGCTTCCTGATAACTTACTTGACATTGTGCAAACTCG 1793
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1833 TCAATTATTGGACAGTGTGGCTCAGCTTCCTCATAACTTACTTGACATTGTGCAAACTCG 1892
Query 1794 AGAAATTCATCGAGGTACTGAAATCTCAGGTGGAGCAGCTGATTCTCCCGAGTCCAGTTC 1853
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 1893 AGAAGTTCATCGAGGTACTGAAATCTCAGGTGAAGCAGCTGATTCTCCAGAGTCCTGTTC 1952
Query 1854 CGTTGCTCCCTTGACCTTCACTGAATCCTTTGTTTCTCATGGTCGCTAA 1902
| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1953 CATCGCTCCCTTGACCTTCACTGAATCCTTTGTCTCTCATGGTCGGTAA 2001
> AT1G70130.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr1:26409743-26411801 REVERSE LENGTH=1971
Length=1971
Score = 396 bits (214), Expect = 5e-109
Identities = 791/1057 (75%), Gaps = 89/1057 (8%)
Strand=Plus/Plus
Query 468 TTCAGCAGGTTATTACAAGGATGATGGTAGATTTATAG-ATCT-CTTGCTTGCCAGT-GG 524
||| || ||||| ||||| |||||||||||||| | | |||| | |||| ||| ||
Sbjct 480 TTCGGCTGGTTACTACAAAGATGATGGTAGATTGGT-GAATCTAGAT-ATTGCAAGTGGG 537
Query 525 AGACCCTATGCAAGTGTGGATTGAATATGATAGC-AAACAGAGACAGCTTAACGTCACAC 583
| | ||||| || || |||||||| ||| | | | ||| | ||||||| | || |||
Sbjct 538 A-AGCCTATACAGGTTTGGATTGAGTATAACAACTCAAC-TAAACAGCTTGATGTTACAA 595
Query 584 TTCATCCTATTCGTG-TCCCTAAGCCAAAGATTCCACTCCTTTCTCTTC-AAAAGGATCT 641
| ||| ||||| | | |||| || |||||||| || ||||| | | ||| |||||
Sbjct 596 TGCATTCTATT-AAGATATCTAAACCTAAGATTCCTCTGCTTTCGATGCGGAAA-GATCT 653
Query 642 TTCTCCCTATTTGCTTGAGTTTATGTACCTTGGATTTTCCTCATCCACG-GGTACA-T-T 698
|||||| ||| | | ||||| ||||||| |||| ||| || | || | || | | |
Sbjct 654 TTCTCCATATCTACATGAGTATATGTACATTGG-CTTTACT--T-CA-GTGGGA-AGTCC 707
Query 699 AACTGCATCTCACTATA-TATTGGGTTGGACG-TTCAAGATTAATGGGA-C-GGCTCCAG 754
|||| | |||||||| | | || || |||| | ||||| | || ||| | | ||| |
Sbjct 708 AACTTCTTCTCACTACATTCTT-GGCTGGA-GTTTCAACAACAA-AGGAGCAGTTTCC-G 763
Query 755 CTATAGACCCCTCTCGACTTCC-AAACGTTCCCCGTTTTA-ATC-AGCCATGGATCCG-- 809
|||| | | |||||| ||||| ||| | |||||| | | ||| || | || | ||
Sbjct 764 ATATAAATCTCTCTCGTCTTCCTAAA-G-TCCCCGATGAAGATCAAG-AACGG-T-CGTT 818
Query 810 GAG-TCTGAAGGGGGTTTTAACGATCAGTTTGACTATATCAGGCGTCGCCA-TACTCATC 867
||| ||| || | | || |||| ||||| | ||| ||||| || || || | |||
Sbjct 819 GAGTTCT-AA---GATCTTGGCGATTAGTTTAAGTATTTCAGGAGT-TACACTAGTTATC 873
Query 868 ATCTTGGGTC-T-CAGCATATGGTTTTTTC-TGAAGAGGAAGAAGCTAC-TGGAAGTTCT 923
||||| || | || ||| | || ||| |||||||||||||| | | |||||||| |
Sbjct 874 GTCTTGATTCTTGGAG-TTAT-G-TTGTTCTTGAAGAGGAAGAAG-TTCTTGGAAGTTAT 929
Query 924 TGAGGACTGGGAGGTGCAGTTTGGTCCTCATAGGTTTGCTTTCAAAGATCTACA-CA-CT 981
|||||||||||||||||||||||||||||||| || ||| ||||||||| | || |
Sbjct 930 TGAGGACTGGGAGGTGCAGTTTGGTCCTCATAAATTCACTTACAAAGATCT-CTTCATC- 987
Query 982 GCAAC-AAAGGGTTTCAAGAATACAGAGCTTCTCGGTCAAGGAGGATTTGGGAAAGTCTA 1040
|| || ||||| ||||||||| | ||| | || || ||||||| ||||| ||||| |
Sbjct 988 GCCACGAAAGG-TTTCAAGAACAGTGAGGTACTTGGGAAAGGAGGTTTTGGAAAAGTTT- 1045
Query 1041 T-AAGGGTA-CTTTACCAG-TGTCCAACGTAGA--GATCGCTGTGAAGA-GAGTTTCTCA 1094
| ||||| | ||| ||| | |||| | ||| | |||||| ||||||| || |||||||
Sbjct 1046 TCAAGGGGATCTT-ACC-GCTGTCTA--GTATACCGATCGCGGTGAAGAAGA-TTTCTCA 1100
Query 1095 TGATTCAAGGCAGGGCATGAGAGGGTTCATT-GCTGAGATCGCAACCATTGGGCGTA-TC 1152
||||||||| || || ||||||| ||| || |||||||| || |||||||| | | |
Sbjct 1101 TGATTCAAGACAAGGAATGAGAGAGTTT-TTAGCTGAGATTGCTACCATTGGTAG-ACTT 1158
Query 1153 AGACATCCCA-ACTTAGTTCGGCTCCAAGGTTACTGCAGACACAAAGGTGAACTCTACTT 1211
|||||||| | | |||||||| || | || ||||| |||| ||||| |||||||||||
Sbjct 1159 AGACATCC-AGATTTAGTTCGTCTTCTTGGGTACTGTAGACGTAAAGGAGAACTCTACTT 1217
Query 1212 GGTATATGA-TTGTATGCCCAAAGGCAGCCTTGATAAGTTCCTTTACGACCAAC-AGACT 1269
||| ||||| || |||||||||||| |||||||||||||| ||||| | |||| | | |
Sbjct 1218 GGTGTATGACTT-TATGCCCAAAGGAAGCCTTGATAAGTTTCTTTATAATCAACCAAA-T 1275
Query 1270 GGTAAT-CTTGATTGGTCACAGAGATTTAAGATCATCAAAGACGTAGCTTCTGGG-CTTT 1327
||| |||||||||||||||||||| || ||||||||||||||||| || ||| || |
Sbjct 1276 CA-AATTCTTGATTGGTCACAGAGATTCAATATCATCAAAGACGTAGCCTC-GGGACTCT 1333
Query 1328 GTTTTTTGCACCAACAATGGGTGCAGGTGATTATCCACAGGGATATTAAACCAGCCAACA 1387
| | ||||| || || ||||| || |||||||| |||||||||||||| ||||| || |
Sbjct 1334 GCTACTTGCATCAGCAGTGGGTTCAAGTGATTATTCACAGGGATATTAAGCCAGCAAATA 1393
Query 1388 TCCTTCTTAACGCTAATATGAATGCTAAACTTGGTGATTTTGGTCTCGCGAAGCTCTG-G 1446
| |||||| | | || ||||| || || || ||||||||||| || |||||||| || |
Sbjct 1394 TTCTTCTTGATGAAAACATGAACGCGAAGCTCGGTGATTTTGGACTTGCGAAGCTATGTG 1453
Query 1447 ATCATGGGATTGA-TCCTCAGACCTCTCATGTGGCAG 1482
| || |||||||| || ||| ||||| |||| ||||
Sbjct 1454 ACCACGGGATTGACTC-TCAAACCTCGAATGTTGCAG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5