BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316004

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70120.1 | Symbols:  | Protein of unknown function (DUF1163)...   523    6e-148


> AT1G70120.1 | Symbols:  | Protein of unknown function (DUF1163) 
| chr1:26408921-26409597 FORWARD LENGTH=582
Length=582

 Score =  523 bits (283),  Expect = 6e-148
 Identities = 420/482 (87%), Gaps = 26/482 (5%)
 Strand=Plus/Plus

Query  52   CTAGCGAACCAAGAAACTCCTGT---GCCAAATATAGAAATAGCTTCTATGGATTTCACT  108
            |||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||
Sbjct  100  CTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTCACT  159

Query  109  GTACTTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATTAGGGTTCCC  168
            || | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  160  GTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTCCCC  219

Query  169  AGTGACCTTCCTAATGTCT-TCATATGTCTTCAAGGAGACATTCAAGCTTCAGTGTTTTA  227
            ||| |||||||||||| || | |||||||| ||||||||||||||||||||| |||||||
Sbjct  220  AGTAACCTTCCTAATGCCTAT-ATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTTTA  278

Query  228  CAAAAAC-ATTAATCTTGTTACTTCGTCCGGACAAAGGTACAACGATCTCAAATCCTG-C  285
            ||| | | |||||||||||||| || || | ||||||||| | |||||||||||| || |
Sbjct  279  CAAGA-CTATTAATCTTGTTACCTCATCTGCACAAAGGTATATCGATCTCAAATC-TGGC  336

Query  286  TCTCCTCAACAACTTAGGGTTTCAGCTTCTATATCTGAAGAAGATATCGGTGGTTTGATT  345
             |  |||||||| |||||||||||| |   |     ||||||||||| |  |||||||||
Sbjct  337  ACAGCTCAACAAATTAGGGTTTCAG-T---A-----GAAGAAGATATTGACGGTTTGATT  387

Query  346  -GGTAAAAACATTATCAAAGACATCAACGAGAAGAGAGAAGTGAAGTTCGGATCGCAGTT  404
             || ||||  ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct  388  AGG-AAAAGGATTATCAAAGATATCAAAGAAAAGAGAGAAGTGAAGTTCGGATCGCAGTT  446

Query  405  GTTTCTTACGGATTGTAGAAAAGGGACAACAGGAGTTTTGAGCTATGTGTGTGATGA-AA  463
            |||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||| | ||
Sbjct  447  GTTTCTAACGGATTGTAGAAAAGGGACCACAGGAGTTATGAGCTATGCGTGCGAT-ATAA  505

Query  464  CCACT-TTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGACTAAGTTCGG-GAACAACCC  521
            ||| | ||||||||||||||||||||||||||||||||| |||| || || || ||||||
Sbjct  506  CCA-TGTTGCGGTTCGAGCCAGGTTCTGAGACCAAGGCGTCTAAATTTGGAGA-CAACCC  563

Query  522  TA  523
            ||
Sbjct  564  TA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5