BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316028
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70400.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 617 2e-176
AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 366 1e-100
AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 342 2e-93
> AT1G70400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS
InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis
thaliana protein match is: pre-mRNA processing ribonucleoprotein
binding region-containing protein (TAIR:AT1G60170.1);
Has 484 Blast hits to 484 proteins in 190 species: Archae
- 0; Bacteria - 0; Metazoa - 149; Fungi - 134; Plants - 124;
Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
| chr1:26531399-26533460 REVERSE LENGTH=910
Length=910
Score = 617 bits (334), Expect = 2e-176
Identities = 424/467 (91%), Gaps = 7/467 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60
||| |||| ||||| || |||| ||||||||||||||||| | |||||||||||||||||
Sbjct 92 ATGACAGAATTAAATACCCTTACCTACGATGATCTCGATAGTGTTTCAAAGCTACAAAAA 151
Query 61 AGTCAGAGATATGCTGATATAATACAAAAAGTGGAAGAGGCTCTTGAGAAAGGAACTGTA 120
|||| |||||||||||||||||| || ||||||||||||||||| | ||||| |||||
Sbjct 152 AGTCGGAGATATGCTGATATAATGCAGCAAGTGGAAGAGGCTCTT--G-AAGGATCTGTA 208
Query 121 TTAGAGTACAAGAAGCTAATCGAGGATTGTAATCAGCTCTTAGTTGATATTGAGAATGAA 180
|||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 209 TTAGAGTACAAGAAGCTAATCGTGGACTGCAAGCAGCTCTTAGTTGATATTGAGAATGAA 268
Query 181 ATAGTCATCGTTCACAACTTTATCCGTGAGAAGTATAGACTTAAGTTTCAAGAGCTTGAG 240
||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 269 ATAGTCATCGTCCAAAACTTTATCCGTGACAAGTATAGAGTTAAGTTTCAAGAGCTTGAG 328
Query 241 TCG-TTGGTTCATCACCCAATCGATTATGTTCGTGTTGTGAAAAGAATTGGCAATGAGAT 299
| | ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 329 TTGCTTG-TTCCTCACCCAATCGATTATGCTCGTGTTGTGAAAAGAATTGGCAATGAGAT 387
Query 300 GGACTTAACCCTTGTTGATCTTGAAGGCCTTCTTCCATCAGCTATGATCATGGTTGTTTC 359
||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 388 GGATTTAAAACTTGTTGATCTTGAAGGCCTTCTTCCATCTGCTATGATCATGGTTCTTTT 447
Query 360 AGTTACTGCTTCAACCACGAAAGGTAACCAACTGCCTA-AGGATGTTCTGCTAAAAACGA 418
||||||||||| |||||| ||||| ||||||||||| | |||||||||||||||| ||||
Sbjct 448 AGTTACTGCTTTAACCACAAAAGGGAACCAACTGCC-AGAGGATGTTCTGCTAAAGACGA 506
Query 419 TAGATGCTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAAG 465
|||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 507 TAGACGCTTGTGATCGGGCTCTGGATCTTGATTCCGCAAGGAAGAAG 553
> AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing
ribonucleoprotein, similar to U4/U6 snRNP-associated 61
kDa protein (Homo sapiens) GI:18249847; contains Pfam profile
PF01798: Putative snoRNA binding domain; blastp match of
63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010
putative U4/U6 snRNP-associated 61 kDa protein
{Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048
REVERSE LENGTH=1812
Length=1812
Score = 366 bits (198), Expect = 1e-100
Identities = 403/498 (81%), Gaps = 29/498 (6%)
Strand=Plus/Plus
Query 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60
||||| || ||| ||||||||||||| ||||||||||||| | |||| ||||| || ||
Sbjct 305 ATGGCGGATTTAGAGACACTTAACTATGATGATCTCGATAGTGTTTCTAAGCTTCAGAAG 364
Query 61 AGTCAGAGATATGCTGATATAATACAAAAAGTGGAAGAGGCTCTTGAGAAAGGA-ACTG- 118
| ||||||||||| |||||| || || ||||| || |||||||||| |||| || |||
Sbjct 365 ACTCAGAGATATGATGATATTATGCACAAAGTAGAGGAGGCTCTTGGGAAA-GATTCTGA 423
Query 119 T-ATTA-GAGTACAAGAAGCTAATCGAGGATTGTAATCAGCTCTT-AGTTGATATTGAGA 175
| || | |||| | ||||| || | |||||||||| |||| || ||||||||||||
Sbjct 424 TGATCATGAGT---ATAAGCTTATTGTGGATTGTAATAAGCT-TTCGGTTGATATTGAGG 479
Query 176 ATGAAATAGTCATCGTTCACAACTTTATCCGTGAGAAGTA-TAGACTTAAGTTTCAAGAG 234
||||||| || || || |||||||||||| || ||||| || |||| ||||||||||
Sbjct 480 ATGAAATCGTTATTGTCCACAACTTTATCAAAGAAAAGTACAAG-CTTAGGTTTCAAGAG 538
Query 235 CTTGAGTCGTTGGTTCATCACCCAATCGATTATGT-TCGTGTTGTGAA-AAGAATTGGCA 292
||||||||||||||||||||||| || || |||| | ||||||| || |||| ||||||
Sbjct 539 CTTGAGTCGTTGGTTCATCACCCTATTGACTATGCAT-GTGTTGTCAAGAAGA-TTGGCA 596
Query 293 ATGAGATGGACTTAACCCTTGTTGATCTTGAAGGCCTT---CTTCCATC-AGCTATGATC 348
|||||| ||| || || ||||||||| ||| |||||| ||| | || |||||| |||
Sbjct 597 ATGAGACGGATTTGACTCTTGTTGATTTTGCTGGCCTTGATCTTAC-TCCAGCTATTATC 655
Query 349 ATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTAAC-CAACTGCCTA-AGGATGTTC 406
|||| | ||||||||||||||||||| |||||||| | || ||||| | ||||||||
Sbjct 656 ATGGCTATTTCAGTTACTGCTTCAACTACGAAAGGGAGTGCA-CTGCC-AGAGGATGTT- 712
Query 407 T-GCTAAAAAC-GATAGATGCTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAA 464
| || |||| | |||| |||||| |||||| | ||||||||||||||||||| |||||
Sbjct 713 TAGC-AAAAGGTGTTAGAGGCTTGTGATCGGGATTTAGATCTTGATTCCGCAAGAAAGAA 771
Query 465 GGTCCTTGACTTTGTTGA 482
||||||||| ||||||||
Sbjct 772 GGTCCTTGAGTTTGTTGA 789
> AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein
binding region-containing protein | chr1:22192773-22195400
FORWARD LENGTH=1819
Length=1819
Score = 342 bits (185), Expect = 2e-93
Identities = 416/520 (80%), Gaps = 46/520 (9%)
Strand=Plus/Plus
Query 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60
||||| || ||| ||||||||||||| ||||||||||||||| |||| ||||| || ||
Sbjct 256 ATGGCTGATTTAGAGACACTTAACTATGATGATCTCGATAATGTTTCTAAGCTGCAGAAG 315
Query 61 AGTCAGAGATATGCTGATA-TA---ATACAA--A-A--A-G----T-GG-AAGAGGCT-C 103
||||||||||||||||||| || ||| || | | | | | || |||| ||
Sbjct 316 AGTCAGAGATATGCTGATATTATGCATA-AAGTAGAGGAGGCTCTTGGGAAAGATTCTGA 374
Query 104 T-----TGAGAAAGGAACTGTATT---AGA-G-TAC--A--AGAAGCTAATCGAGGATTG 149
| ||||||||||||||| || ||| | | | | | ||||| || | ||||||
Sbjct 375 TGGAGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTATAAGCTTATTGTGGATTG 434
Query 150 TAATCAGCTCTT-AGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTG 208
||||||||| || || ||||||||||||||||| || || || |||||||||||| |
Sbjct 435 TAATCAGCT-TTCGGTCGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAG 493
Query 209 AGAAGTA-TAGACTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCAATCGATTAT 267
| ||||| || |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 494 ACAAGTACAAG-CTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTAT 552
Query 268 GT-TCGTGTTGTGAA-AAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAG 325
| | |||||||||| |||| |||| ||||||| ||| || | ||||||||||| | |
Sbjct 553 GCAT-GTGTTGTGAAGAAGA-TTGGGAATGAGACGGATTTGGCTCTTGTTGATCTCGCTG 610
Query 326 GCCTTCTTCCATCAGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTA 385
||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||| |
Sbjct 611 ACCTTCTTCCTTCAGCTATTATCATGGTTGTTTCAGTTACTGCTTTAACTACGAAAGGGA 670
Query 386 AC-CAACTGCCTA-AGGATGTTCTGCTAAAAAC-GATAGATGCTTGTAATCGGGCTCTAG 442
|| ||||| | |||||||| ||| |||| | |||| |||||| |||||||| |||
Sbjct 671 GTGCA-CTGCC-AGAGGATGTTTTGC-AAAAGGTGTTAGAGGCTTGTGATCGGGCTTTAG 727
Query 443 ATCTTGATTCCGCAAGGAAGAAGGTCCTTGACTTTGTTGA 482
||||||||||||||||||||||||||||||| ||||||||
Sbjct 728 ATCTTGATTCCGCAAGGAAGAAGGTCCTTGAGTTTGTTGA 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5