BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316029
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-... 929 0.0
> AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-26883818
FORWARD LENGTH=1179
Length=1179
Score = 929 bits (503), Expect = 0.0
Identities = 764/885 (86%), Gaps = 38/885 (4%)
Strand=Plus/Plus
Query 356 TCGACAAATCTCAAAACAAAACTATTCAAGT-TGTGGGGTCTTGTGATGGATTGGTCTTG 414
||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 311 TCGACGAATCTCAAAATAAAACTATTCAAGTAT-TGGGGTCTTGTGATGGATTGGTCTTG 369
Query 415 ATTAGGATCTACGACGATTTTAGGTACATTTACTTGATCAATCCGACGACTGAAGAACGC 474
|| ||||| | |||||||| |||| ||||||||||||||||||||||||| |||||| |
Sbjct 370 CTTCGGATCCATGACGATTTCAGGTCCATTTACTTGATCAATCCGACGACTAAAGAACAC 429
Query 475 TTG--ACGTTTCATCCCGAATTTACGCAATGGCCATTAACTTTTAGATT-C-AAATCTAC 530
|| || |||| ||||||||||| |||||||||||| ||| |||| || | || | |
Sbjct 430 ATGAAAC-TTTC-TCCCGAATTTATGCAATGGCCATTTACTCTTAG-TTACTTAA-CCCC 485
Query 531 CGCAATGGTCGATAGACCATGGAGACAAGTTACTCAAGGAGTCTTGCATTATCCACCAGA 590
|||||||| | ||| ||||||||||||| || ||||| ||| ||| ||||| | || |
Sbjct 486 CGCAATGGCCAATAAACCATGGAGACAACTTTCTCAATCAGTATTGGATTAT-GA-CATA 543
Query 591 --TGTGAAGATAATGCCGTTTCTTGCTGGATTTGGCAAAGATATTGTTACAAAATCATAT 648
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 544 TCTGTGAAGAGAATGCCGTCTCTTGCTGGATTTGGCAAAGATATTGTTAAAAAATCTTAT 603
Query 649 AAGGTGGTTTTGATGTATACAAGAAAAGGAAAT-CATGATCCTTG-TTTCAAGGTGAAGG 706
|||||||||||||| |||||||| | | ||||| |||||| | || ||||||| ||||
Sbjct 604 AAGGTGGTTTTGATATATACAAG-ATATGAAATACATGAT-CATGAGTTCAAGGCCAAGG 661
Query 707 TCCTATCCCTTGATAATGGTGAGCAAAGAGACGTATGTTTTTATAGA-ATGAGCATG-TT 764
||||||||||||||||||||||||||||||||||| | |||||| || || | ||| ||
Sbjct 662 TCCTATCCCTTGATAATGGTGAGCAAAGAGACGTAGGGTTTTAT-GACAT-A-CATCATT 718
Query 765 -TATATTCTGCGAAGAGCAAACATCAGTCTACGCAAACGGATCAGTCTTTTGGTTGACAT 823
||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 719 GTATCTTCTGCGATGAGCAAACATCAGTCTACGCCAACGGATCCCTCTTTTGGTTGACAT 778
Query 824 TAT-GTAA-CTCTAGGAAAACAGCTTTAA-AGCTACTAGCTATCGATCTTCACACTGAAG 880
|| | || || ||| ||||| ||| | ||||| ||||||||||||||||||||||||
Sbjct 779 TAAAG-AAGCT-TAGTCAAACATCTT-ACCAGCTATTAGCTATCGATCTTCACACTGAAG 835
Query 881 AATTTCGATGGATAATATTACCTA-AGTGTTACATTAGATATGATTCTAGTATAGAAATG 939
|||||||||||||| ||||||| | ||||| ||| | ||||| | ||| ||||||||||
Sbjct 836 AATTTCGATGGATATTATTACC-AGAGTGTGACACCAAATATGCTACTAATATAGAAATG 894
Query 940 TGGAATCTGAATGACCGATTGTGCCTATCGGATGTGCTAGAATGTTCAAATTTGGTGGTT 999
|||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 895 TGGAATCTGAATGAACGTTTGTGCCTATCGGATGTGCTAGAAAGTTCAAATTTGGTCGTT 954
Query 1000 TGGAGTTTACAACAAGAATATCCTACCGAGAAATGGGAGAAAATATATTCTATTG-GATT 1058
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 955 TGGAGTTTACACCAAGAATATCCTACCGAAAAATGGGAGAAAATATATTCTATTAAGATT 1014
Query 1059 TA--T-A-AA-AACCAACCAGTTACATGAAAAGTTTTGGATGCTTGGTCTAGCTGCTGCC 1113
| | | || ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 GACGTTATAAGAACCAACCAATTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCTGCC 1074
Query 1114 TATTTTCCATGTATTGGAAATCATCGAGATCAAGTTTCtttttttAGACAAAGAACGGTT 1173
|||||| || ||| |||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 1075 TATTTTTCAAATATCAGAAATCGTCAAGATCAAGTTTCTTTTTTTAGACAAAGAACGATT 1134
Query 1174 TCGTATTCGCCAACAATGATTTGTCCTTCAAGTTTGATGCTCTGA 1218
||||||| |||||||||||||| |||||||| ||||||||| |||
Sbjct 1135 TCGTATTTGCCAACAATGATTTCTCCTTCAAATTTGATGCTTTGA 1179
Score = 398 bits (215), Expect = 8e-110
Identities = 280/311 (90%), Gaps = 5/311 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGATGACAAACATTTTAATCCTAAGACAATAATTATATCAGAGGATATGGTTGAA 60
|||||| |||| |||||| |||||| ||||||||| ||||| |||| ||||| | ||||
Sbjct 1 ATGGAGAATGATAAACATAATAATCCCAAGACAATATTTATACCAGATGATATAGCTGAA 60
Query 61 GAGATCTTTCACCATCTTCCATTAAAATCACTGGCTAGATTCAAAGTCTTGTCaaaaaaa 120
| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGGATCTTTCACCATCTTCCAATAAAATCACTGGCTAGATTCAAAGTCTTATCAAAAAAA 120
Query 121 TGGAGATCGATGATCGAATCAACCTACTTTTCCCACAAAAGACTCGTTCGTACAGGATTA 180
|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 121 TGGACATCGATGATCGAATCAACCTACTTTTCCCACAAACGACTCATTCGTACAGGCTTA 180
Query 181 CCAACCCCTAATATGAAATTTATGT-ATGTTAGTCGACATTTTTCAGCAAATTTTGTTGA 239
||||||||||||||||||||| | | || |||||| ||| ||| |||| |||||||||||
Sbjct 181 CCAACCCCTAATATGAAATTTCT-TCATATTAGTCAACACTTTACAGCGAATTTTGTTGA 239
Query 240 AGAAGATTCAAACTCAACAACTTTGCTTTTGGAGACTTTTTCTAGAGATGATCACAACAA 299
|||| |||||||||||| |||||| ||||||||||||||||||||||||||||| || |
Sbjct 240 AGAATATTCAAACTCAATAACTTTTCTTTTGGAGACTTTTTCTAGAGATGATCA-AA-A- 296
Query 300 CAACAGAAAAA 310
|||||||||||
Sbjct 297 CAACAGAAAAA 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5