BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316029 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-... 929 0.0 > AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-26883818 FORWARD LENGTH=1179 Length=1179 Score = 929 bits (503), Expect = 0.0 Identities = 764/885 (86%), Gaps = 38/885 (4%) Strand=Plus/Plus Query 356 TCGACAAATCTCAAAACAAAACTATTCAAGT-TGTGGGGTCTTGTGATGGATTGGTCTTG 414 ||||| |||||||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct 311 TCGACGAATCTCAAAATAAAACTATTCAAGTAT-TGGGGTCTTGTGATGGATTGGTCTTG 369 Query 415 ATTAGGATCTACGACGATTTTAGGTACATTTACTTGATCAATCCGACGACTGAAGAACGC 474 || ||||| | |||||||| |||| ||||||||||||||||||||||||| |||||| | Sbjct 370 CTTCGGATCCATGACGATTTCAGGTCCATTTACTTGATCAATCCGACGACTAAAGAACAC 429 Query 475 TTG--ACGTTTCATCCCGAATTTACGCAATGGCCATTAACTTTTAGATT-C-AAATCTAC 530 || || |||| ||||||||||| |||||||||||| ||| |||| || | || | | Sbjct 430 ATGAAAC-TTTC-TCCCGAATTTATGCAATGGCCATTTACTCTTAG-TTACTTAA-CCCC 485 Query 531 CGCAATGGTCGATAGACCATGGAGACAAGTTACTCAAGGAGTCTTGCATTATCCACCAGA 590 |||||||| | ||| ||||||||||||| || ||||| ||| ||| ||||| | || | Sbjct 486 CGCAATGGCCAATAAACCATGGAGACAACTTTCTCAATCAGTATTGGATTAT-GA-CATA 543 Query 591 --TGTGAAGATAATGCCGTTTCTTGCTGGATTTGGCAAAGATATTGTTACAAAATCATAT 648 |||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||| Sbjct 544 TCTGTGAAGAGAATGCCGTCTCTTGCTGGATTTGGCAAAGATATTGTTAAAAAATCTTAT 603 Query 649 AAGGTGGTTTTGATGTATACAAGAAAAGGAAAT-CATGATCCTTG-TTTCAAGGTGAAGG 706 |||||||||||||| |||||||| | | ||||| |||||| | || ||||||| |||| Sbjct 604 AAGGTGGTTTTGATATATACAAG-ATATGAAATACATGAT-CATGAGTTCAAGGCCAAGG 661 Query 707 TCCTATCCCTTGATAATGGTGAGCAAAGAGACGTATGTTTTTATAGA-ATGAGCATG-TT 764 ||||||||||||||||||||||||||||||||||| | |||||| || || | ||| || Sbjct 662 TCCTATCCCTTGATAATGGTGAGCAAAGAGACGTAGGGTTTTAT-GACAT-A-CATCATT 718 Query 765 -TATATTCTGCGAAGAGCAAACATCAGTCTACGCAAACGGATCAGTCTTTTGGTTGACAT 823 ||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 719 GTATCTTCTGCGATGAGCAAACATCAGTCTACGCCAACGGATCCCTCTTTTGGTTGACAT 778 Query 824 TAT-GTAA-CTCTAGGAAAACAGCTTTAA-AGCTACTAGCTATCGATCTTCACACTGAAG 880 || | || || ||| ||||| ||| | ||||| |||||||||||||||||||||||| Sbjct 779 TAAAG-AAGCT-TAGTCAAACATCTT-ACCAGCTATTAGCTATCGATCTTCACACTGAAG 835 Query 881 AATTTCGATGGATAATATTACCTA-AGTGTTACATTAGATATGATTCTAGTATAGAAATG 939 |||||||||||||| ||||||| | ||||| ||| | ||||| | ||| |||||||||| Sbjct 836 AATTTCGATGGATATTATTACC-AGAGTGTGACACCAAATATGCTACTAATATAGAAATG 894 Query 940 TGGAATCTGAATGACCGATTGTGCCTATCGGATGTGCTAGAATGTTCAAATTTGGTGGTT 999 |||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 895 TGGAATCTGAATGAACGTTTGTGCCTATCGGATGTGCTAGAAAGTTCAAATTTGGTCGTT 954 Query 1000 TGGAGTTTACAACAAGAATATCCTACCGAGAAATGGGAGAAAATATATTCTATTG-GATT 1058 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 955 TGGAGTTTACACCAAGAATATCCTACCGAAAAATGGGAGAAAATATATTCTATTAAGATT 1014 Query 1059 TA--T-A-AA-AACCAACCAGTTACATGAAAAGTTTTGGATGCTTGGTCTAGCTGCTGCC 1113 | | | || ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1015 GACGTTATAAGAACCAACCAATTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCTGCC 1074 Query 1114 TATTTTCCATGTATTGGAAATCATCGAGATCAAGTTTCtttttttAGACAAAGAACGGTT 1173 |||||| || ||| |||||| || ||||||||||||||||||||||||||||||| || Sbjct 1075 TATTTTTCAAATATCAGAAATCGTCAAGATCAAGTTTCTTTTTTTAGACAAAGAACGATT 1134 Query 1174 TCGTATTCGCCAACAATGATTTGTCCTTCAAGTTTGATGCTCTGA 1218 ||||||| |||||||||||||| |||||||| ||||||||| ||| Sbjct 1135 TCGTATTTGCCAACAATGATTTCTCCTTCAAATTTGATGCTTTGA 1179 Score = 398 bits (215), Expect = 8e-110 Identities = 280/311 (90%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 1 ATGGAGGATGACAAACATTTTAATCCTAAGACAATAATTATATCAGAGGATATGGTTGAA 60 |||||| |||| |||||| |||||| ||||||||| ||||| |||| ||||| | |||| Sbjct 1 ATGGAGAATGATAAACATAATAATCCCAAGACAATATTTATACCAGATGATATAGCTGAA 60 Query 61 GAGATCTTTCACCATCTTCCATTAAAATCACTGGCTAGATTCAAAGTCTTGTCaaaaaaa 120 | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 61 GGGATCTTTCACCATCTTCCAATAAAATCACTGGCTAGATTCAAAGTCTTATCAAAAAAA 120 Query 121 TGGAGATCGATGATCGAATCAACCTACTTTTCCCACAAAAGACTCGTTCGTACAGGATTA 180 |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 121 TGGACATCGATGATCGAATCAACCTACTTTTCCCACAAACGACTCATTCGTACAGGCTTA 180 Query 181 CCAACCCCTAATATGAAATTTATGT-ATGTTAGTCGACATTTTTCAGCAAATTTTGTTGA 239 ||||||||||||||||||||| | | || |||||| ||| ||| |||| ||||||||||| Sbjct 181 CCAACCCCTAATATGAAATTTCT-TCATATTAGTCAACACTTTACAGCGAATTTTGTTGA 239 Query 240 AGAAGATTCAAACTCAACAACTTTGCTTTTGGAGACTTTTTCTAGAGATGATCACAACAA 299 |||| |||||||||||| |||||| ||||||||||||||||||||||||||||| || | Sbjct 240 AGAATATTCAAACTCAATAACTTTTCTTTTGGAGACTTTTTCTAGAGATGATCA-AA-A- 296 Query 300 CAACAGAAAAA 310 ||||||||||| Sbjct 297 CAACAGAAAAA 307 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5