BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316069
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70800.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 760 0.0
AT1G70810.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 558 2e-158
> AT1G70800.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:26702705-26703790 FORWARD LENGTH=717
Length=717
Score = 760 bits (411), Expect = 0.0
Identities = 490/528 (93%), Gaps = 6/528 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAACCAGAGGAAGAAGTTGAGATTAAGGAACTGGTAGGGCTTGTGAGAATCCAA 60
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 53 ATGGAGAAAACAGAGGAAGAGGTTGAGATGAAGGAACTGGTAGGGCTTGTGAGAATCCTA 112
Query 61 GTGAAGAGAGGGATCAATCTTGCTCGTCGAGACGCTTTTAGCAGCGACCCTTTTGTCGTC 120
||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 113 GTGAAGAGAGGGATCGATCTTGCTCGTCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTC 172
Query 121 ATAACCATGGGAT-CACAGAAGCTGAAATCTTTTACTGTGAAAAATAACTGCAACCCAGA 179
||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 173 ATAACCATGGG-TCCACAGAAGCTGAAATCTTTTACTGTGAAGAATAACTGCAACCCAGA 231
Query 180 GTGGAACGAAGAGTTGACCCTTGCGATTGAAAATCCCAATGAACCTGTGAATCTGATGGT 239
|||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 232 GTGGAACGAAGAGTTGACTCTTGCGATCGAAGATCCCAATGAACCTGTGAAGCTGATGGT 291
Query 240 GTATGATAAAGATACATTTACATCAGACGACAAGATGGGAGATGCGGAGATAGATATGAA 299
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 292 GTATGATAAAGATACATTTACAGCGGACGACAAGATGGGAGATGCGCAGATAGATATGAA 351
Query 300 ACCGTTCCTAGA-GATTCACAAAATGGGTTTGCAACAACTTCCAGACGGAACAGAGATCA 358
|||||||||||| | |||||||| | |||||| || |||||||| | |||| |||| |||
Sbjct 352 ACCGTTCCTAGACG-TTCACAAACTCGGTTTGAAAGAACTTCCACATGGAAAAGAGCTCA 410
Query 359 AGAGAATTGTACCAACCAGAGACAACTGCTTGGCTGAAGATAGCAGAATCGTCTATGATA 418
|||||||||| || |||||||| ||||||||| |||||||||||| |||||||| ||||
Sbjct 411 AGAGAATTGTGCCCACCAGAGATAACTGCTTGTCTGAAGATAGCATAATCGTCTCCGATA 470
Query 419 ACGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGATCG 478
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 ATGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCG 530
Query 479 AGATCCAGCTTGAATGG-TTAAAAAATCCAGGTGGTAGTGGACTCTGA 525
||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 531 AGATCCAGCTTGAATGGCTTAAAAA-TCCAGGTGGTAGTGGACTCTGA 577
> AT1G70810.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:26704130-26705236 FORWARD LENGTH=720
Length=720
Score = 558 bits (302), Expect = 2e-158
Identities = 436/499 (87%), Gaps = 15/499 (3%)
Strand=Plus/Plus
Query 4 GAGAAACCAGAGGAAGAAGTTGAGATTAAGGAACTGGTAGGGCTTGTGAGAATCCAAGTG 63
|||||| ||||||||| || |||||| ||||||| ||||||||| ||||||||| ||||
Sbjct 55 GAGAAAACAGAGGAAG-AGGTGAGATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTG 113
Query 64 AAGAGAGGGATCAATCTTGCTC-GTCGAGACGCTTTTAGCAGCGACCCTTTTGTCGTCAT 122
|||||||||||||||||||||| | |||||| || | ||||||||||||||||| |||||
Sbjct 114 AAGAGAGGGATCAATCTTGCTCAG-CGAGACACTCTAAGCAGCGACCCTTTTGTTGTCAT 172
Query 123 AACCATGGGATCACAGAAGCTGAA-A-TCTTTTACTGTGAAAAATAACTGCAACCCAGAG 180
|||||||||||||||||||||||| | || | | |||| |||||||||||||||| |||
Sbjct 173 AACCATGGGATCACAGAAGCTGAAGACTCGTGT--TGTGGAAAATAACTGCAACCCTGAG 230
Query 181 TGGAACGAAGAGTTGACCCTTGCGATTGAA-A-ATCCCAATGAACCTGTGAATCTGATGG 238
|||||||| || || ||||||||| || || | ||||| ||||||||||||||||||| |
Sbjct 231 TGGAACGAGGAATTAACCCTTGCG-TT-AAGACATCCCGATGAACCTGTGAATCTGATAG 288
Query 239 TGTATGATAAAGATACATTTACATCAG-ACGACAAGATGGGAGATGCGGAGATAGATATG 297
||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||
Sbjct 289 TGTATGATAAAGATACATTCACATC-GCACGACAAGATGGGAGATGCAAAGATAGATATT 347
Query 298 AAACCGTTCCTAGAGATTCACAAAATGGGTTTGCAACAACTTCCAGACGGAACAGAGATC 357
||||| || || ||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 348 AAACCATTTCTGGAGGTTCACAAAATGGGTTTGCAAGAACTTCCAGATGGAACAGAGATC 407
Query 358 AAGAGAATTGTACC-AACCAGAGACAACTGCTTGGCTGAAGATAGCAGAATCGTCTATGA 416
|||||| |||| || ||| ||||| ||||| |||||||||| ||||| ||||||| |
Sbjct 408 AAGAGAGTTGTGCCCAAC-AGAGAAAACTGTTTGGCTGAAGCGAGCAGTATCGTCTCCAA 466
Query 417 TAACGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGAT 476
||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||| || |
Sbjct 467 TAATGGCAAAATCGTTCAGAACATGATTCTTCTGTTGAGGAATGTCGAATGCGGTGAGGT 526
Query 477 CGAGATCCAGCTTGAATGG 495
|||||| ||||||||||||
Sbjct 527 CGAGATTCAGCTTGAATGG 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5