BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316070
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70810.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 798 0.0
AT1G70800.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 549 9e-156
> AT1G70810.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:26704130-26705236 FORWARD LENGTH=720
Length=720
Score = 798 bits (432), Expect = 0.0
Identities = 476/498 (96%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 137
Query 61 CGAGACACTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGGATCACATAAGCTGAAG 120
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 138 CGAGACACTCTAAGCAGCGACCCTTTTGTTGTCATAACCATGGGATCACAGAAGCTGAAG 197
Query 121 ACGCGTACTGTGGAAAATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGCGGTA 180
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 198 ACTCGTGTTGTGGAAAATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGCGTTA 257
Query 181 AAACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATCGCAC 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 AGACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATCGCAC 317
Query 241 GACAAGATGGGAGATGCAAAGATAGATATCAAACCATTCCTAGAGGTTCACAAAATGGAT 300
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |
Sbjct 318 GACAAGATGGGAGATGCAAAGATAGATATTAAACCATTTCTGGAGGTTCACAAAATGGGT 377
Query 301 TTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCACCAGAGTCAATTGT 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 378 TTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCAACAGAGAAAACTGT 437
Query 361 TTATCTGAAGCAAGCAGTATCGTCTCCAATAATGGCAAAATCGTTCAGGACATGATTCTT 420
|| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 438 TTGGCTGAAGCGAGCAGTATCGTCTCCAATAATGGCAAAATCGTTCAGAACATGATTCTT 497
Query 421 CTGTTGAAGAATGTCGAATGCGGCGAGGTCGAGATTCAGCTTGAATGGATTGAAATTCCA 480
||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 498 CTGTTGAGGAATGTCGAATGCGGTGAGGTCGAGATTCAGCTTGAATGGATTGATATTCCA 557
Query 481 GGTTCTAGAGGGCTTTGA 498
||||||||||||||||||
Sbjct 558 GGTTCTAGAGGGCTTTGA 575
> AT1G70800.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:26702705-26703790 FORWARD LENGTH=717
Length=717
Score = 549 bits (297), Expect = 9e-156
Identities = 429/491 (87%), Gaps = 16/491 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 60
||| ||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||| |
Sbjct 80 ATGAAGGAACTGGTAGGGCTTGTGAGAATCCTAGTGAAGAGAGGGATCGATCTTGCTC-G 138
Query 61 -CGAGACACTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGGAT-CACATAAGCTGA 118
|||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 139 TCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGG-TCCACAGAAGCTGA 197
Query 119 AGA-CGCGTACTGTGGAA-AATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGC 176
| | | |||||| ||| |||||||||||||| ||||||||||| || || || |||||
Sbjct 198 A-ATCTTTTACTGT-GAAGAATAACTGCAACCCAGAGTGGAACGAAGAGTTGACTCTTGC 255
Query 177 GGTAAAACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATC 236
| | || ||||| ||||||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 256 GATCGAAGATCCCAATGAACCTGTGAAGCTGATGGTGTATGATAAAGATACATTTACAGC 315
Query 237 GCACGACAAGATGGGAGATGCAAAGATAGATATCAAACCATTCCTAGAGGTTCACAAAAT 296
| ||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||| |
Sbjct 316 GGACGACAAGATGGGAGATGCGCAGATAGATATGAAACCGTTCCTAGACGTTCACAAACT 375
Query 297 -GGATTTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCACCAGAG-TC 354
|| |||| ||||||||||| |||||| |||| |||||||| ||||||||||||||| |
Sbjct 376 CGG-TTTGAAAGAACTTCCACATGGAAAAGAGCTCAAGAGAATTGTGCCCACCAGAGAT- 433
Query 355 AATTGTTTATCTGAAGCA-AGCAGT-ATCGTCTCCAATAATGGCAAAATCGTTCAGGACA 412
|| || || ||||||| | |||| | ||||||||| |||||||||| |||||||||||||
Sbjct 434 AACTGCTTGTCTGAAG-ATAGCA-TAATCGTCTCCGATAATGGCAAGATCGTTCAGGACA 491
Query 413 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCGAGGTCGAGATTCAGCTTGAATGGATTG 472
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||
Sbjct 492 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCGAGATCCAGCTTGAATGGCTTA 551
Query 473 AAATTCCAGGT 483
||| |||||||
Sbjct 552 AAAATCCAGGT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5