BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316075

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70870.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   516    8e-146


> AT1G70870.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr1:26721020-26721563 REVERSE 
LENGTH=420
Length=420

 Score =  516 bits (279),  Expect = 8e-146
 Identities = 307/321 (96%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  130  GAGCATATTGGTGATGACTCTAAAGGCACCAAGAACTGGACTTTGTCTGTTGATGGAAAA  189
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  100  GAGCATATTGGTGATGGCTGTAAAGGCACCAAGAACTGGACTTTGTCTGTTGATGGAAAA  159

Query  190  GTGGAGAAAATGAAGGAGAGAGTGGTAATAGACGAGGCAAACAAATCGATGACTGTGTTT  249
            || |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct  160  GTAGAGAAAATGAAGGAGAGAGTTGAAATAGACGAGGCAAACAAATCAATGACTGTGTTT  219

Query  250  GTGTTCGAAGGAGATGTGATGGAGAACTATAGTAGCTTCAAATGTAATCTTCAGATCATA  309
            |||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||
Sbjct  220  GTGTTCGAAGGAGATGTGATGGAGAATTATAGTAGTTTCACATGCAATCTTCAGATCATA  279

Query  310  CCAAAGCTTCATGGAAGAAGTATAGCAAGATGGAGCTGGGAATACGAAAAACTTAATGCA  369
            |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct  280  CCAAAGCTTCATGGTAGAAGTATAGCAAGATGGAGCTGGGAATACGAGAAGCTTAATGCA  339

Query  370  GATTCTCCAGCTCCGAACAAATACATGGATTTTGCAGTCTATCTCACTAAAGATATTGAA  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  340  GATTCTCCAGCTCCGAACAAATACATGGATTTTGCAGTCTATCTCACTAAAGACATTGAA  399

Query  430  TCTAATCTTCTCAAAACATAG  450
            |||||||||||||||||||||
Sbjct  400  TCTAATCTTCTCAAAACATAG  420


 Score =  100 bits (54),  Expect = 9e-21
 Identities = 60/63 (95%), Gaps = 0/63 (0%)
 Strand=Plus/Plus

Query  1   ATGGCTCAGATGGCGAAATCCATGATAGAAGTCGAGATCAATGTATCAGCCGATAAGATT  60
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct  1   ATGGCTCAGATGGCGAAATCCATGATAGAAGTGGAGATCAATGTATCAGCTGATATGATT  60

Query  61  TTC  63
           |||
Sbjct  61  TTC  63



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5