BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316118
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71340.1 | Symbols: | PLC-like phosphodiesterases superfami... 1482 0.0
> AT1G71340.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr1:26885170-26888338 REVERSE LENGTH=2390
Length=2390
Score = 1482 bits (802), Expect = 0.0
Identities = 930/992 (94%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTATTGAATGGCGGCGGCAGAGAAGACGGCCACTCGACGGCGGAGGAACTCGC 60
||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1018 ATGGCGATTTTTGAAT---GGCGGCACAGAAGACGGCCATTCGACGGCGGAGGAACTCGT 1074
Query 61 CGCCGTC-TATTCTTCAGGCCATTGTATTCGAGAAATTTCAAGAGAACAATTCTATTCGC 119
||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1075 CGCCGTCGT-TTCTTCAGCCCATTGTATTCGAGAAATTTCAAGAGAACGATTCTCTTCGC 1133
Query 120 TGTGGCCTTCTTAGCCATCTTCCCTCCTCTCTACTTCCATTTCAAGCTCCGACGAATTCG 179
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGTGATTTTCTTAGCTATCTTCCCTCCTCTCTACTTCCATTTCAAGCTCCGACGAATTCG 1193
Query 180 TCAGATTGTCGCGCAAAAGTGCGATTGGCTTCACCATCCTCCACTTGTCTGTGCTCACGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TCAGATTGTCGCGCAAAAGTGCGATTGGCTTCACCATCCTCCACTTGTCTGTGCTCACGG 1253
Query 240 CGGCGATTCAACTCTCGCTTTCCCCAACACTATGGATGCTTACAGTTTCGCTATACGTTC 299
||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1254 CGGCGATTCCACCCTCGCTTTCCCAAACACTATGGACGCTTACAGTTTCGCTATACGTTC 1313
Query 300 TCGAGTTGATTGCATCGAAGTAGATGTTTCTCGATCCTCCGATGGTGTTTTATTCGCTCT 359
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 TCGAGTTGATTGCATTGAAGTCGATGTTTCTCGTTCCTCCGATGGTGTTTTATTCGCTCT 1373
Query 360 CCACAACAGGGATCTGCAGCGTATTGCTCGTAACTCTTCTGTTCAAGTTGGAGATCTGAG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TCACAACAGGGATCTGCAGCGTATTGCTCGTAACTCTTCTGTTCAAGTTGGAGATCTGAG 1433
Query 420 TATGAAACAGATTAAGGAACTTGATATCTCGGAGATTGTTAAAGGAACCTTGGGAAATAG 479
|||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 1434 TATGAAACAGATCAAGGAACTCGATGTCTCGGAGATTGTTAAAGGAACCTTGGGAAGTAG 1493
Query 480 TAGGATTCCTACTCTTGAAGATGCTTTAGCGTTGATATCGAATTCCGTCCGGAAAGTGAT 539
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1494 TAGGATTCCTACTCTTGAAGAGGCTTTAGCGTTGATATCGAATTCAGTCCGGAAAGTGAT 1553
Query 540 TCTTGATGCGAAAGTTGGACCGCCAACGTATGAAAAGGGCCTT-GCACAAGACATTCTTT 598
|||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||||
Sbjct 1554 CCTTGATGCCAAAGTTGGACCGCCAATGTATGAAAAGGGG-TTAGCACAAGACATCCTTT 1612
Query 599 CTGTTATTGAGAGAGCGCAGTGCAAGAACTGCATCGTATGGGCCAAAAGTGACACTTTGG 658
|| |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1613 CTATTATTGAGAGAGCGCAGTGCAATAATTGCATCGTATGGGCCAAAAGCGACACTTTGG 1672
Query 659 CTAGAGACATAATCAGGCAAGCACCAGATACTACAGTAGGATACATTGTGATGGTGGATC 718
|||| |||||||| || | |||||||||||||| || ||||||||||||||||| ||||
Sbjct 1673 CTAGGGACATAATTAGACGAGCACCAGATACTATGGTGGGATACATTGTGATGGTAGATC 1732
Query 719 CTTCGACTGGGGTGAGAAACAACCTGCTGAGAATGAAGGGAGCTAGGGTTGTGGGAGTCT 778
||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1733 CTTTGACTGGGGCGAGAAACAGCCTGCTGAGAATGAAGGGAGCTAGGGTTGTGGGAGTTT 1792
Query 779 ATCATCCCTTGATCGATGAAGAATTAGTTAGAGTTGTGCGTCGGAGAAACAAAGATGTTT 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1793 ATCATCCCTTGATCGATGAAGAATTAGTTAGAGTTGTCCGTCGGAGAAACAAAGAGGTGT 1852
Query 839 ACGCATGGACTGTGGATGATGCTGATCCGATGAAAAGGATGCTTCACTTAGGTGTGGATG 898
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1853 ATGCATGGACTGTGGATGATGCTGATCCCATGAAAAGGATGCTTCACTTAGGTGTGGATG 1912
Query 899 CTGTTGTTACGAGTGATCCATCTATGTTTCAGGGTCTCATGGAAGATCTTAGAACTGAGT 958
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 CTGTTGTGACGAGCGATCCATCTATGTTTCAGGGTCTCATGGAAGATCTTAGAACTGAGT 1972
Query 959 GTCTTGAAGAAGGCTTTTCAATACGGACATGA 990
||||||||||||| |||||||||||||| |||
Sbjct 1973 GTCTTGAAGAAGGTTTTTCAATACGGACGTGA 2004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5