BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316133
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71690.1 | Symbols: | Protein of unknown function (DUF579) ... 1225 0.0
> AT1G71690.1 | Symbols: | Protein of unknown function (DUF579)
| chr1:26947765-26949168 FORWARD LENGTH=1033
Length=1033
Score = 1225 bits (663), Expect = 0.0
Identities = 824/900 (92%), Gaps = 18/900 (2%)
Strand=Plus/Plus
Query 1 ATGACGACTAATCTCCCATTTCCGATGACCCCCAAACTCATACTCTCTAGCTTCGTGTCT 60
||||||||| |||||||||||||||||||| | | ||||||||||||||||||||| |||
Sbjct 42 ATGACGACTTATCTCCCATTTCCGATGACCACGAGACTCATACTCTCTAGCTTCGTCTCT 101
Query 61 CTCGTCGTAATCACTCTCTTCTTCATCACCAGAACCGGTTTCTCACCGTCTTCTTCAATA 120
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 102 CTCGTCGTACTCACTCTCTTCTTCATCACCAGAACCGGTTTCTCACCGTCATCTTC-AT- 159
Query 121 TT--TCAGCCTCTGAACAACACTCTCCGGATCTCCACTTCCTCCACCGGAAGTAAGTTAC 178
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 160 TTCATCAGCCTCTGAACAACACTCTCCGGATCTCCACTTCCTCCACCGGCAGTAAATTAC 219
Query 179 AGAGCTCAAAATCCACAAGTTGTAATAAGATCCCTCCTTCGCTCGCCGATGCTCTCGTCC 238
|||| || | | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 220 AGAG-TC-----CAAGAAGTTGTAATAAGATCCCTCCTTCCCTCGCCGATGCTCTCGTCC 273
Query 239 ACTATGCCGCCTCCAATGTCACTCCCCAGCAAACACTCTCCGAAATCTCCGTCACCAAGA 298
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 274 ACTATGCCTCCTCCAATGTCACTCCCCAGCAAACTCTCTCCGAAATCTCCGTCACCAAGA 333
Query 299 AGGTTTTAGAGAAGAAATCTCCGTGCAACTTCCTGGTATTTGGTCTTGGTCGCGATAGCT 358
||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 334 AGGAATTAGAGAAGAAATCTCCGTGCAACTTCTTGGTATTTGGTCTTGGTCACGATAGCT 393
Query 359 TGATGTGGGCGGCGCTAAATCACGGAGGAAGAACCATCTTCTTAGAAGAGGACGAGTTAT 418
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 394 TGATGTGGGCGACGTTAAATCACGGAGGAAGAACCATCTTCTTAGACGAGGACGAGTCAT 453
Query 419 GGATTCACAAAATCGCTGAGAAATTCCCGTCTCTGGAATCGTACCACGTCCGGTACAATA 478
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 454 GGATTCACCAAATCGCTGAGAAATTCCCGTCTCTTGAATCGTACCACGTCCGGTACAAGA 513
Query 479 CCAAGGTAAGAGACGC--AACGGCTCTCATGGCAGCGACGAGAGACAGGGAAGAGTGCCG 536
|||||||||||||||| || ||||||||||| || |||| |||||| ||||| |||||
Sbjct 514 CCAAGGTAAGAGACGCGGAA--GCTCTCATGGCTGCTACGAAAGACAGAGAAGAATGCCG 571
Query 537 TCGCGTGTCAACTGATCTTCGTGTGTCTGCGTGCGAGCTTGCGTTGAAGGGCTTACCAGA 596
|||||||||||||||||| | || || | |||||||||||||||||||||||||| ||
Sbjct 572 CCGCGTGTCAACTGATCTTAGGGTTTCCACTTGCGAGCTTGCGTTGAAGGGCTTACCGGA 631
Query 597 GGTGGTTTACGAAACAGAGTGGGATTTAATCATGGTGGATGCTCCCACGGGGTTTGATGA 656
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 632 GGTGGTTTACGAGACAGAGTGGGATCTAATCATGGTGGATGCTCCGACGGGGTTTCATGA 691
Query 657 CGAAACTCCAGGG-CGGATGACAGCGATTTATACAGCGGGGATGATCGCGAGGAGGCGGA 715
||| |||| ||| |||||| | |||||||| || |||||||||||||||||||| ||||
Sbjct 692 AGAAGCTCC-GGGACGGATGTCGGCGATTTACACGGCGGGGATGATCGCGAGGAGACGGA 750
Query 716 AGGATGATGG-AGAGACAACGGCTGTGTTTGTGCATGATGTGGATAGGAAAGTGGAGGAT 774
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AGGATGA-GGAAGAGACAACGGCTGTGTTTGTGCATGATGTGGATAGGAAAGTGGAGGAT 809
Query 775 GAGTTCTCAATGGAGTTTTTGTGTAGAGATTACATGACGGAGCAAGAAGGAAGACTCCGT 834
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 810 GAGTTCTCAATGGAGTTTTTGTGTAGAGATTACATGACGAAGCAAGAGGGAAGACTCCGT 869
Query 835 CATTTCACGGTGCCTAGCCACCGGAACCATGGTTTCTCCGGCGCTAAATTATGTCCCTAA 894
||||||||||||||||| ||||| ||| ||||| ||||||||| |||||| ||||| |||
Sbjct 870 CATTTCACGGTGCCTAGTCACCGTAACTATGGTGTCTCCGGCGTTAAATTCTGTCCTTAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5