BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316139
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71710.1 | Symbols: | DNAse I-like superfamily protein | ch... 3175 0.0
> AT1G71710.1 | Symbols: | DNAse I-like superfamily protein |
chr1:26973567-26976831 REVERSE LENGTH=2281
Length=2281
Score = 3175 bits (1719), Expect = 0.0
Identities = 1909/2001 (95%), Gaps = 12/2001 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCCAGTTGAACCCGCCGGGATAATGAAGAAAACCCATCGTCAGAAATCTCAGAGA 60
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 58 ATGTCTCCAGTTGAACCCGCCGGTATAATGAAGAAATCTCATCGTCAGAAATCTCAGAGA 117
Query 61 TTATGGGCAAAGCTAGTAATGAGAAAGTGGTTGAACATAAGTGGTAGAGATCCTGAGTAT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTATGGGCAAAGCTAGTGATGAGAAAGTGGTTGAACATAAGTGGTAGAGATCCTGAGTAT 177
Query 121 GGTGCTGATACTGA-AGATGAATCCGAAAACGAAGATGTTCGTGAAGACAACGATGACTC 179
|||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GGTGCTGATACTGATA-ACGAATCCGAAAACGAAGATGCTCGTGAAGACAACGATGACTC 236
Query 180 TAGTTCCGATGAAGAAGAAT-CTTCTAGCTCAAGAGGAAGAGAATCAAAAGTTTGTGAGA 238
||| ||||||||||||| | | | |||| |||||||||||||||||||||| |||||
Sbjct 237 TAGCTCCGATGAAGAAG-GTGGTAGTGGCTCGAGAGGAAGAGAATCAAAAGTTTATGAGA 295
Query 239 ACGCGGAGGATGCAATCGCAGCCGCTTCCGCCGTTGTAGACGCAGCAGCAGCTGCGGCGG 298
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 296 ACGCGGAGGACGCAATCGCAGCCGCTTCAGCCGTTGTAGACGCAGCAGCAGCAGCGGCGG 355
Query 299 AGTTTATTAGCAATGAAGCTCCAATGAAGTTACGAAGAAGGAATTCAGAAACATTAAGAG 358
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 AGTTTATTAGCAATGATGCTCCAATGAAGTTAAGAAGAAGGAATTCAGAAACATTAAGAG 415
Query 359 CACAGTACATTAACAACAAAGAAATAAGAGTTTGTGTTGGTACGTGGAACGTTGGAGGAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CACAGTACATTAACAACAAAGAAATAAGAGTTTGTGTTGGTACGTGGAACGTTGGAGGAA 475
Query 419 TCTCACCACCATCTGATCTTGACATCGATGACTGGATTGAAATTAATCAACCAGCTGATA 478
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 476 TCTCACCACCATCTGATCTTGACATTGACGACTGGATTGAAATTAACCAACCAGCTGATA 535
Query 479 TCTACGTTCTTGGTTTACAAGAGATTGTTCCGTTAAATGCTGGAAACATTCTTGGAGCGG 538
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 536 TCTACGTTCTTGGGTTACAAGAGATTGTTCCTTTAAATGCTGGAAACATTCTTGGAGCTG 595
Query 539 AAGATAATCGTCCGGTTGCGAAATGGGAAGAAGTGATTAGAGAAGCATTGAACAGAGTTA 598
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAGATGATCGTCCTGTTGCTAAATGGGAAGAAGTGATTAGAGAAGCATTGAACAGAGTTA 655
Query 599 GACCAAAACTCTCTGGGGTTAAGAGTTATAGTGATCCACCATCTCCTGGTAGATTTAAAC 658
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 656 GACCAAAACTCTCCGGGGTTAAGAGTTATAGTGATCCACCATCTCCGGGTAGGTTTAAAC 715
Query 659 CTTTTGAGGAAACACATGATGTTATAGAGGAAGAAGTAGCTTTTGAGAGTGATAGTGATG 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTTTTGAGGAAACACATGATATTATAGAGGAAGAAGTAGCTTTTGAGAGTGATAGTGATG 775
Query 719 CTGGTGTTGAGGTTCATCCGATTAACGAGGAAGAAGAAGAAGAAACCGATAGGCTCTGGG 778
||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || ||||
Sbjct 776 CTGGTGTTGAGATTCATCCGATTGACGAGGAGGAAGAAGAGGAAACCGATAGACTTTGGG 835
Query 779 CGCTTAAA-CATGACGGTGGAGTTATCGGTGAAGTTCACACTCTTGTTAACCCGAATACC 837
|| ||||| |||||||||||||||||||| |||||| | ||||||||| |||||||||||
Sbjct 836 CG-TTAAAACATGACGGTGGAGTTATCGGCGAAGTTAAGACTCTTGTTGACCCGAATACC 894
Query 838 GGTTTGCCGGTTGTTGAGATCAAGAGACAGTTTTCGATTCCTAAGAAGCTAGACAGACAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGTTTGCCGGTTGTTGAGATCAAGAGACAGTTTTCGATTCCTAAGAAGCTAGACAGACAA 954
Query 898 CTTTGTTTACGTGCTGATA-CTTTTGAGGGGAATAT-CGAAGAGGATTCTAGTCAAACCG 955
||||||||||||||||||| |||| |||||| || ||| || ||||||| ||||||||
Sbjct 955 CTTTGTTTACGTGCTGATAGCTTTA-AGGGGA-TAAGCGACGATGATTCTACTCAAACCG 1012
Query 956 GTATGAAAACGATAAACCGGATGTTAAGCGGGAAAGAACGGATCGGTTTGAGCTGGCCTG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1013 GTATGAAAACGATAAACCGGATGTTAAGCGGGAAAGAACGGATCGGTTTGAGTTGGCCTG 1072
Query 1016 AGCCACCATTGAACATGTTAGGACCTTGCGTTCTCGATAGACAGCCGTCGATAAAGACAG 1075
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1073 AGCCACCATTGAACATGTTAGGACCTTGTGTTCTCGATAGACAGCCGTCGATAAAGACAG 1132
Query 1076 TGAAGTCTTTAAAAACAGCAAAGTCTTTCAAGGCTTTTAGTTCGTTTAAGTCTGTAGCCG 1135
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1133 TGAAGTCTTTAAAAACAGCCAAGTCTTTCAAGGCTTATAGTTCGTTTAAGTCTGTAGCCG 1192
Query 1136 GAAGCAACAACGGGATTCCGCCGGAGGTATTGGCTCTAGCGGAAATGGACTTGCAGTTGC 1195
||| ||||||||||||||| || ||||| || |||||||||||||||||| || ||||||
Sbjct 1193 GAAACAACAACGGGATTCCCCCTGAGGTTTTAGCTCTAGCGGAAATGGACCTGAAGTTGC 1252
Query 1196 TAATGGAGAGGAAACGAAGACCGGCTTATGTGAGGCTTGTGAGTAAACAAATGGTTGGGA 1255
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1253 TAATGGAGAGGAAACGAAGACCGGCTTATGTGAGGCTAGTGAGTAAACAAATGGTTGGGA 1312
Query 1256 TTCTTTTGACCATTTGGGTTAAACGAAGTCT-GCGAAAACATATTCAAAACGTACGAGTG 1314
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1313 TTCTTTTGACCATTTGGGTTAAACGAAG-CTTGCGGAAACATATTCAAAACGTACGAGTC 1371
Query 1315 TCTACTGTTGGAGTTGGCGTCATGGGATATATTGGTAACAAGGGAGCTGTATCTGTGAGC 1374
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1372 TCTACTGTTGGTGTTGGCGTTATGGGATATATTGGTAACAAGGGAGCTGTGTCTGTGAGC 1431
Query 1375 ATGTCGATAAACCAGACGTTCTTTTGTTTCATAAACACGCATTTAACGGCTGGAGAAAGA 1434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1432 ATGTCGATAAACCAGACGTTCTTTTGTTTCATAAACACGCATTTAACGGCAGGAGAAAGA 1491
Query 1435 GAGGTTGATCAGATCAAGAGGAATGCTGATGTACACGAGATACATAAAAGAACAGTCTTT 1494
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GAGGTTGATCAGATAAAGAGGAATGCTGATGTACACGAGATACATAAAAGAACAGTCTTT 1551
Query 1495 CACTCTGTCTCAGCTCTTGGACTTCCCAAGCTTATCTATGATCACGAAAGAATAATCTGG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CACTCTGTCTCAGCTCTTGGACTTCCCAAGCTTATCTATGATCACGAAAGAATAATCTGG 1611
Query 1555 TTAGGAGATCTCAACTATCGGCTTAATTCATCGTATGAGAAAACCAGAGACCTCATTTCC 1614
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1612 CTAGGTGATCTCAACTATCGGCTTAGTTCATCGTATGAGAAAACCAGAGACCTCATTTCC 1671
Query 1615 AAGAGAGAATGGTCCAAGTTACTAGAATATGACCAGCTGGTAAAGGAATACAGAAAAGGT 1674
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1672 AAGAGAGAATGGTCTAAATTACTTGAATATGACCAGCTGGTAAAGGAATACAGAAAAGGT 1731
Query 1675 AGAGCATTTGACGGATGGTCAGAAGGAACTCTACATTTTCCACCAACTTATAAGTACCAA 1734
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AGAGCATTTGATGGATGGTCAGAAGGAACTCTACATTTTCCACCAACTTATAAGTACCAA 1791
Query 1735 GCGAATTCCGATGAGTACACCGCAAACGATGGAAAGGCCCCGAAAAGAACACCAGCTTGG 1794
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1792 GCGAATTCCGATGAGTACACCGCAAACGATGGAAAGGCGCCGAAAAGAACACCAGCTTGG 1851
Query 1795 TGTGACAGAGTACTATCCTACGGGAAAGGAATGAGGTTGGTTCATTACAGGCGAACCGAA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1852 TGTGACAGAGTACTATCCTACGGGAAAGGAATGAGGTTGGTTCATTACAGGAGAACCGAA 1911
Query 1855 CAGAAATTCTCAGATCATCGTCCGGTCACAGCGATATACATGGCTGAAGTCGAAGTGTTT 1914
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1912 CAGAAATTCTCAGATCATCGTCCGGTTACAGCGATATACATGGCTGAAGTCGAAGTGTTT 1971
Query 1915 TCTGCTAGGAAGCTTCAGCGAGCGTTGACATTCACGGATGCAGAGATTGAAGACGAGGGA 1974
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1972 TCTGCGAGGAAACTTCAGCGAGCGTTGACATTTACGGATGCAGAGATTGAAGACGAGGGA 2031
Query 1975 CTTGTTGCCGTTCTCGTTTAA 1995
||||| |||||||||||||||
Sbjct 2032 CTTGTAGCCGTTCTCGTTTAA 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5