BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316144
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71760.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 597 5e-170
> AT1G71760.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot
apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING:
F mature embryo stage, petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage; Has
84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria
- 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0;
Other Eukaryotes - 10 (source: NCBI BLink). | chr1:26989350-26990499
FORWARD LENGTH=895
Length=895
Score = 597 bits (323), Expect = 5e-170
Identities = 462/526 (88%), Gaps = 22/526 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAGTACTCTCTTTATCGCTCTCCAATGTTACGAATGTTCGACTATGCAGGTGAAG 60
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 65 ATGGCGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGGTGAAG 124
Query 61 CAGAAGAAGAAAAGCAGTAACAAATGGGTTTGTGTGATTTGTAATCAGAAGCAATCGGTG 120
|||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |||
Sbjct 125 CAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTG 184
Query 121 AAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGGAGCTTCGTTTCTTTGTACAGTCCTTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 185 AAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGGAGCTTCGTTTCTTTGTCCAATCGTTT 244
Query 181 AATATGTCTCGCAAAGTTGCCGATGA-G-GT----TGC------AGATTCGTTTTCGGAG 228
|||||||||||||||||||||||||| | | ||| |||||||||| | |||
Sbjct 245 AATATGTCTCGCAAAGTTGCCGATGAAGAGGCACATGCTGTTGGAGATTCGTTTCCAGAG 304
Query 229 GTTGATGTTGAAGGAGAGGAGGTTTAAGATGTTATTGGAATGAAGAAGCGATCTGATTGG 288
||| ||||||||||||||| | | || |||| ||||| |||||||||||||||||||
Sbjct 305 GTTTATGTTGAAGGAGAGGTTAATGAGGAGGTTAATGGAACGAAGAAGCGATCTGATTGG 364
Query 289 AGTGAGTATCTTGATTTCGATTC-GCCAAATGATCGCCGGAGATTAGTTGGAGAAGAAGA 347
||| | || || ||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 365 AGTCAATACCTCGATTTCGATTCAGT-AAATGATCGCCGGAGATTAGCTGGAGAAGAAGA 423
Query 348 CGATGTCAAGATTGTGACTGAGATGCCGAAAG-A-TATGTTTAAGAGGCCAAAGCTGAAC 405
|||||| |||||||| ||||||||||| || | | |||||| || |||||||||||||||
Sbjct 424 CGATGTGAAGATTGTCACTGAGATGCC-AA-GCAATATGTTCAAAAGGCCAAAGCTGAAC 481
Query 406 AAAGATTATAATGCTGGTGGATCATCATCAATTACAGGAGGTGGGAAGAAAGACAGTAAT 465
||||| | ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 482 AAAGAGTCTAATGCTGGTGGATCATCATCAAATACAGGAGGTGAGAATAAAGACAGTAAT 541
Query 466 GC-ACTCTTCAAGCCTTCCTTCTCCACG-CGCAGCATCAAAATGCC 509
| | ||||||||||||| ||||||| | ||||||||||||| |||
Sbjct 542 GAGA-TCTTCAAGCCTTCTTTCTCCA-GACGCAGCATCAAAAAGCC 585
Score = 289 bits (156), Expect = 3e-77
Identities = 219/249 (88%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 524 ATGGAGTAATGACAAGGAAGAAGGATATAGAAGAGAGAAATCTAGAGTCAGAGAGAATTA 583
||| |||| |||| |||||||||||||| |||||||| |||||||||||||| ||| |||
Sbjct 651 ATGAAGTAGTGACGAGGAAGAAGGATATGGAAGAGAGGAATCTAGAGTCAGAAAGAGTTA 710
Query 584 TTAAGCCAGCTTCGAAATGGGACGCCTACTTGATTGATGAGGAAGGAGAACATCAGGCAC 643
|||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 711 CTAAGCCAGCTTCGAAATGGGACGCCTACTTAATCGATGACGAAGGAGAACACCAAGCAC 770
Query 644 CACCACAAATTGGTG-GAAATAAAACCTTGAAGGATGATGCTCATGTAGGAGAATGGGAC 702
|||| | | |||||| ||| || ||||||||||||| | | ||||||| |||||||
Sbjct 771 CACCGCGATTTGGTGTTAAA-AAGGCCTTGAAGGATGA--C-GAAGTAGGAGGATGGGAC 826
Query 703 AGAGCAATAATGGAGAGAAATACGGAATACCAGATAGTAGACGACGAGGTACATCCAGAT 762
|||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 827 AGAGCAGTAATGGAGATAAATACGGAATATCAGATAGTAGACGACGAGGTACATCCAGAT 886
Query 763 TTCATGTGA 771
|||||||||
Sbjct 887 TTCATGTGA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5