BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316160
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71900.1 | Symbols: | Protein of unknown function (DUF803) ... 1504 0.0
AT1G34470.1 | Symbols: | Protein of unknown function (DUF803) ... 479 2e-134
> AT1G71900.1 | Symbols: | Protein of unknown function (DUF803)
| chr1:27061486-27064496 FORWARD LENGTH=1743
Length=1743
Score = 1504 bits (814), Expect = 0.0
Identities = 965/1035 (93%), Gaps = 21/1035 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAATCTGGTGGAAGCTGGCGAGATTCTTATAAAGGAATGTCGTCTGATAACATC 60
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 269 ATGGCGGAATCTAGTGGAAGTTGGAGAGATTCTTATAAAGGAATGTCGTCTGATAACATC 328
Query 61 AAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 AAGGGTTTGGTTTTAGCGTTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAG 388
Query 121 AAGAAAGGGCTTAAGAAAGCTGCGAGCACTGGCACTAGGGCAGGTGTTGGTGGGTATTCT 180
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 389 AAGAAAGGGCTTAAGAAAGCTGCGAGTACTGGTACTAGGGCAGGTGTTGGTGGGTATTCT 448
Query 181 TATCTCTACGAGCCCCTTTGGTGGATCGGCATGACGACAATGTTACTTGGTGAAATTGCC 240
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 449 TATCTCTACGAGCCTCTTTGGTGGATTGGCATGACGACAATGTTACTTGGTGAAATTGCC 508
Query 241 AATTTCGCTGCTTATGCATTTGCGCCGGCTATACTTGTCACTCCTCTAGGTGCTGTCAGT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 509 AATTTCGCTGCTTATGCATTTGCGCCTGCTATACTTGTCACTCCTCTAGGTGCTGTCAGT 568
Query 301 ATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAACTACACATCTTTGGA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 569 ATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAACTACATATCTTTGGA 628
Query 361 ATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCTTACATGCCCCTCAA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 629 ATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACAATTGTCTTACATGCCCCTCAA 688
Query 421 GAACAAGAAATTGATTCTGTGATTGAAGTTTGGAATCTTGCAACAGAACCAGCCTTCATG 480
|||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 689 GAACGTGAAATTGACTCTGTGATTGAAGTTTGGAATCTTGCAACTGAACCAGCATTCATG 748
Query 481 TTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCCGTTTTGCCCCCCTA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 749 TTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCCGTTTTGTGCCCCAA 808
Query 541 TATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCGCTTGTGGGATCATTATCG 600
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 809 TATGGGCAAACAAATGTAATGGTTTACATTGGTATTTGTTCGCTCGTGGGATCATTATCG 868
Query 601 GTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACATTTTCTGGAACAAATCA- 659
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 869 GTAATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACCTTTTCAGGAACAAATCAG 928
Query 660 --A----AT--TCAT-CGTGGGTATTTT--TTGTT-GT-CTAACTT-TGTTACTAAAGGA 705
| || ||| | ||| |||| ||| | || || |||| ||| ||| |
Sbjct 929 TTATTTTATCCTCAAACATGGATATTCACCTTGGTCGTACTTACTTGTGTGG-TAACCCA 987
Query 706 ATTGCATTTCACTTA--CA-GGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATA 762
| || | | ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ACTGAACT--ACTTAAACAAGGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATA 1045
Query 763 TACTACGTGATGTTTACATCTCTAACTATTTTGGCCAGTGTCATCATGTTTAAGGACTGG 822
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1046 TACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGGACTGG 1105
Query 823 GATCGACAAAACGGTACTCAAATTGTTACAGAAATGTGTGGATTTGTTACAATACTTTCA 882
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1106 GATCGGCAAAACGGTACTCAAATTGTTACAGAAATATGTGGATTTGTTACAATACTTTCA 1165
Query 883 GGCACTTTTCTTCTCCACAGAACAAAGGATATGGTCGAGGGTTCATCGGTAATATTACCG 942
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1166 GGCACTTTTCTTCTCCACAGAACAAAGGACATGGTCGAGGGTTCGTCGGTAATATTACCG 1225
Query 943 TTGCGGATAAGCAAGCATATAAATGAGGAAGAAGGCATTCCACTTAGACGCCAAGAATCT 1002
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1226 TTGCGGATAAGCAAGCATATAAATGAAGAAGAAGGCATTCCACTCAGACGCCAAGAATCT 1285
Query 1003 CTCCGGTCACCTTAA 1017
|||||||||||||||
Sbjct 1286 CTCCGGTCACCTTAA 1300
> AT1G34470.1 | Symbols: | Protein of unknown function (DUF803)
| chr1:12604300-12607033 FORWARD LENGTH=1656
Length=1656
Score = 479 bits (259), Expect = 2e-134
Identities = 741/967 (77%), Gaps = 59/967 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGAATCTG-GTGGAAGCTGGCGAGATTCTTATAAAGGAATGTCGTCTGATAACAT 59
||||| || | || |||| || ||| ||||| | |||||||||||||| || ||||| ||
Sbjct 275 ATGGC-GAGTTTGAGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATAT 333
Query 60 CAAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAA 119
|||||||| || || || || ||||| || || ||||||||||||||||||||||||||
Sbjct 334 AAAGGGTTTAGTATTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAA 393
Query 120 GAAGAAAGGGCTTAAGAAAGCTGCGAGCA-CTGG-CACTAGGGCAGGTGT-TGGTGGGTA 176
||||||||| || |||| ||||| | || |||| | | || |||||| | ||| || ||
Sbjct 394 GAAGAAAGGTCTCAAGAGAGCTG-GTGCTTCTGGTCTC-AGAGCAGGT-TCTGGAGGTTA 450
Query 177 TTCTTATCT-CTACGAGCCCCTTTGGTGGATCGGCATGACGACAATG-TTACTTGGTGAA 234
|||||| || || ||||| || |||||| | ||||||| || ||| || | || |||
Sbjct 451 TTCTTACCTGCTT-GAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTG-TAGGGGAA 508
Query 235 ATTGCCAATTTCGCTGCTTATGCATTTGCGCCGGCTATACTT-GTCACTCCTCTAGGTGC 293
||||||||||| ||||||||||| |||||||| || || || || |||||||| |||||
Sbjct 509 ATTGCCAATTTTGCTGCTTATGCCTTTGCGCCTGCCATT-TTAGTAACTCCTCTTGGTGC 567
Query 294 TGTCAGTATCATTATCAGTGCTG-TCTTAGCTCATATTATATTACGGGAAAAACTACACA 352
| |||| || ||||||||||||| |||| |||||| | || ||| ||||| | || |
Sbjct 568 TCTCAGCATAATTATCAGTGCTGCTCTT-GCTCATGTCATCCTACACGAAAAGTTGCATA 626
Query 353 TCTTT-GGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCTTACAT 411
|||| || ||||||| |||| |||||||||||| ||||| | ||||||||||||||||
Sbjct 627 -CTTTCGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACTATTGTCTTACAT 685
Query 412 GCCCCTCAAGAACAAGAAATTGATTCTGTGATTG-AAGTTTGGAATCTTGCAACAGAACC 470
|| |||||||||||||| |||||||||||| || |||| ||||||||||| ||||||||
Sbjct 686 GCTCCTCAAGAACAAGAGATTGATTCTGTG-TTACAAGTATGGAATCTTGCGACAGAACC 744
Query 471 AGCCTT-CATGTTCTATGC-G-AGTCTGGTAATTGGGGCTGCTGT-ATTTCTCATTA-TC 525
|| || | | | ||| || | || | | || | || || || | || ||||| | |
Sbjct 745 TGCTTTTCTTCT-CTACGCTGCAG-CAG-TAGTAGGAGCAGCCATTATA-CTCAT-AGTT 799
Query 526 C-GTTTTGCCCCCCTA-TATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCGC 583
| |||| | || | | || || || || | || ||||| ||||| || |||| || |
Sbjct 800 CAGTTT-GTACCAC-AGTACGGTCAGTCACATGTCATGGTATATATCGGGGTTTGTTCTC 857
Query 584 TTGTGGGATCATTATCGGTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACAT 643
|||| |||||||| ||||||||||| || ||||| || || |||||||||||||| || |
Sbjct 858 TTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTTACGT 917
Query 644 TTTCTGGAACAAATCA---AATTCA---TC-G---TGGGTATTTTT--TGTT-GT-CTAA 689
|||| |||| ||||| |||| | || | ||||| || || | || || |
Sbjct 918 TTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCACGCTGATAGTTCTCA 977
Query 690 CTTT-GTTACTAAAGGAATTGCATT-TCACTTA-CA-GGCTCTTGATACATTCAATACAG 745
| | || | ||| || || | | || | | || ||| ||||| || ||||| || |
Sbjct 978 CCTGCGTGA-TAACCCAAATGAACTATC--TAAACAAGGCGCTTGACACTTTCAACACGG 1034
Query 746 CTATAGTATCTCCTATATACTACGTGATGTTTACATC-TCTAACTATTTTGGCCAGTGTC 804
|| |||| || ||||||||||| || ||||| ||||| | | || || | || ||||||
Sbjct 1035 CTGTAGTTTCACCTATATACTATGTTATGTTCACATCAT-TGACCATCCTAGCTAGTGTC 1093
Query 805 ATCATGTTTAAGGACTGGGATCGACAAAACGGTACTCAAATTGTTACAGAAATGTGTGGA 864
|||||||||||||||||||||||||| |||| ||||| || || || || |||||||
Sbjct 1094 ATCATGTTTAAGGACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGGG 1153
Query 865 TTTGTTACAATACTTTCAGGCACTTTTCTT-CTCCACAGAACAAAGGATATGGTCGAGGG 923
||||| ||||| |||||||| || ||| || || |||| ||||||||||||||| || ||
Sbjct 1154 TTTGTGACAATCCTTTCAGGAACCTTT-TTGCTTCACAAAACAAAGGATATGGTTGATGG 1212
Query 924 TTCATCG 930
||| |||
Sbjct 1213 TTCTTCG 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5