BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316163
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71930.1 | Symbols: VND7, ANAC030 | vascular related NAC-dom... 1519 0.0
> AT1G71930.1 | Symbols: VND7, ANAC030 | vascular related NAC-domain
protein 7 | chr1:27076140-27077957 FORWARD LENGTH=1168
Length=1168
Score = 1519 bits (822), Expect = 0.0
Identities = 930/982 (95%), Gaps = 8/982 (1%)
Strand=Plus/Plus
Query 1 ATGGATAATATAATGCAATCGTCTATGCCACCGGGATTCCGATTTCATCCGACAGAGGAA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 66 ATGGATAATATAATGCAATCGTCAATGCCACCGGGATTCCGATTTCATCCGACAGAGGAA 125
Query 61 GAGCTTGTGGGTTATTACCTAGAGAGAAAGATCAATTCAATGAAGAGTGCTTTAGATGTT 120
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 126 GAGCTTGTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTC 185
Query 121 ATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGCTAGGTGTAAACTA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 186 ATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGCGAGGTGTAAACTA 245
Query 181 GGGTATGAAGAACAAAATGAGTGGTACTTCTTTAGTCATAAGGATAGGAAGTACCCGACC 240
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 246 GGGTATGAAGAGCAAAACGAGTGGTACTTCTTTAGTCATAAGGACAGGAAGTACCCTACC 305
Query 241 GGGACTAGGACCAACAGAGCCACCGCGGCAGGGTTCTGGAAAGCCACCGGTAGAGACAAG 300
||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 306 GGGACTAGGACCAACCGAGCCACTGCGGCTGGGTTCTGGAAAGCCACGGGTAGAGACAAG 365
Query 301 GCAGTACTTTCAAAGAACATTGTCATCGGAATGCGGAAGACACTTGTCTACTACAAGGGT 360
|| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GCGGTACTATCAAAAAACAGTGTCATCGGAATGCGGAAGACACTTGTCTACTACAAGGGT 425
Query 361 CGAGCTCCTAATGGAAGAAAGTCCGATTGGATCATGCACGAATACCGCCTCCAAAACTCC 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 426 CGAGCTCCTAATGGAAGAAAGTCCGATTGGATCATGCACGAATACCGTCTCCAAAACTCC 485
Query 421 GAGCTTGCCCCAGTTCAGGAGGAAGGGTGGGTGGTGTGTCGAGCATTCAGGAAGCCAATT 480
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 486 GAGCTTGCCCCGGTTCAGGAGGAAGGCTGGGTGGTGTGTCGAGCATTTAGGAAGCCAATT 545
Query 481 CCAAACCAGAGGCCATTAGGGTACGAGCCATGGCAGAACCAGCTATACCACGTTGAAAAT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 546 CCAAACCAGAGGCCATTAGGGTACGAGCCATGGCAGAACCAGCTCTACCACGTCGAAAGT 605
Query 541 AGTAACAACTACTCATCTTCAGTGACGATGAACACGAGTCATCATATCGGTGCATCTTCA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 606 AGTAACAACTACTCATCTTCAGTGACAATGAACACGAGTCATCATATCGGTGCATCTTCA 665
Query 601 TCGAAC-CATAACCTTAATCAAATGCTCATGAGCAATAACCACTACAATCCTAATAATGT 659
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TC-AAGTCATAACCTTAATCAAATGCTCATGAGCAATAACCACTACAATCCTAATAATAC 724
Query 660 ATCCTCATCGATGCATCAATATGGCAACAACGAGCTACCTCAGCTGGACAGCCCGAGCTT 719
||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||
Sbjct 725 ATCCTCATCGATGCATCAATATGGCAACATTGAGCTCCCGCAGTTGGACAGCCCGAGCTT 784
Query 720 GTCGCCGAGTCTAGGGACAAATAAAGATCAGAACGAGAGTTTCGAGCAAGAAGAAGAGAA 779
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GTCGCCTAGTTTAGGGACGAATAAAGATCAGAACGAGAGTTTCGAGCAAGAAGAAGAGAA 844
Query 780 GAGCTTTAACTGTGTGGATTGGAGAACACTAGATAGCTTGCTTGAGACACAAGTCACACA 839
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 845 GAGCTTTAACTGTGTGGATTGGAGAACACTAGATACCTTGCTTGAGACACAAGTCATACA 904
Query 840 TCCACATAACCCTAATGTTCTTATGACTTCGTTCGAAACGCAGTCGTATCATCCGGCGCC 899
||| |||||||||||| |||||||| |||| |||||||||||||| ||||||||||
Sbjct 905 TCCGCATAACCCTAATATTCTTATG--TTCG----AAACGCAGTCGTATAATCCGGCGCC 958
Query 900 GAGCTTCCCTTCCATGCATCAAAACTATAATGAGGTCGAAGCCAATATTCATCATTCTCT 959
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 959 AAGCTTCCCTTCCATGCATCAAAGCTATAATGAGGTCGAAGCTAATATTCATCATTCTCT 1018
Query 960 TGGATGCTTCCCTGACTCGTAA 981
||||||||||||||||||||||
Sbjct 1019 TGGATGCTTCCCTGACTCGTAA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5