BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316165

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71950.1 | Symbols:  | Proteinase inhibitor, propeptide | ch...   532    7e-151


> AT1G71950.1 | Symbols:  | Proteinase inhibitor, propeptide | 
chr1:27080184-27081613 REVERSE LENGTH=720
Length=720

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 378/418 (90%), Gaps = 20/418 (5%)
 Strand=Plus/Plus

Query  1    ATGCAAACATTTGCTCGTGGAACAAGCGTCTACCTGAACCACCA-catcatcatcatcat  59
            |||||||||||||||| ||||||||| |||||||   |||  || ||||||| || || |
Sbjct  41   ATGCAAACATTTGCTCCTGGAACAAGAGTCTACC---ACC-TCATCATCATCGTCTTCTT  96

Query  60   catcGTCTTCTTCTTAT--TC--TCATCG-----ATCGTCATGGC---TGAATCTACTGG  107
            | || |||||| |||||  ||  || |||     |||||||||||   ||||| ||| ||
Sbjct  97   CTTCTTCTTCTGCTTATCATCGTTCTTCGCTTCAATCGTCATGGCTGATGAATATACCGG  156

Query  108  AGCAGCAACGGTATCGTCCGAAGCAAAGGTTCACATCATCTACACCGAGAAACCCACCGA  167
            || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  157  AGAAGCAACGGGATCGTCGGAAGCAAAGGTTCACATCATCTACACCGAGAAACCTACCGA  216

Query  168  TGAAGAACCTAAAACCTATCATCTCCGTACCCTTTCCTCTGCTCTCGGCAGTGAGGAAGC  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  TGAAGAACCTAAAACCTATCATCTCCGTACCCTTTCCTCTGCTCTCGGCAGTGAGGAAGC  276

Query  228  TGCAAAAGATGCTTTGATTTACAGTTACAAGGAAGCTGCTTCTGGTTTTTCAGCTAAGCT  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  TGCAAAAGATGCTTTGATTTACAGTTACAAGGAAGCTGCTTCTGGTTTTTCAGCTAAGCT  336

Query  288  CACACCTGAGCAAGTCTCCGAGATATCAAAACAACCAGGTGTAATTCAAGTTGTGCCAAG  347
            ||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct  337  CACTCCTGAGCAAGTCGCTGAGATATCAAAACAACCAGGTGTGATTCAAGTTGTGCCAAG  396

Query  348  CCAGACTTATCAGCTGCACAAACCtggtggtggtggtggtggtTTCAAGTTGACCTAA  405
            ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||
Sbjct  397  CCAGACTTATCAGCTGCACAAACCTGGTGGTGGTGGTGGT--TT-CAAGTTGACCTAA  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5