BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316186
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72160.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 2008 0.0
AT4G09160.1 | Symbols: | SEC14 cytosolic factor family protein... 438 6e-122
> AT1G72160.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:27153581-27155664 REVERSE LENGTH=1770
Length=1770
Score = 2008 bits (1087), Expect = 0.0
Identities = 1378/1510 (91%), Gaps = 53/1510 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAA-CAACCTACTACCACTCTCGTTACACCGGAAAAGCTACCATCCTCAGA 59
||||| || ||| | | |||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 56 ATGGCTGAAGAACCTA-CTACTACCACTCTCGTTACACCGGAAAAGCTACC-TTCTCCGA 113
Query 60 -CCTCACGCCTCCGGTAGAATCGGAGCCTACTCAAGAAGTTCTACCG--AGAG--AG--A 112
|||||||||| | | || ||| || |||||||||| | |||||| |||| || |
Sbjct 114 GCCTCACGCCTTCTGAAGTATCTGAATCTACTCAAGATGCCCTACCGACAGAGACAGAAA 173
Query 113 --CT---GTAACT-CCGGAGACTAATCCGCCGGAATCTGCAGAAT-CCACCACCAAGCCA 165
|| | || | | ||||||||||| |||||| |||||| || ||||||||||||||
Sbjct 174 CTCTGGAGAAAGTGACTGAGACTAATCCACCGGAAACTGCAG-ATACCACCACCAAGCCA 232
Query 166 GAAGAAGAAACCGCGGCAGAGCATCATCCACCGACAGTGACGGAAACAGAAACAGCATCG 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 233 GAAGAAGAAACCGCGGCAGAGCATCATCCACCGACAGTGACGGAAACAGAAACTGCATCG 292
Query 226 ACGGAGAAACAAGAGCTCGGAGACGAATCATCATCATCGCAGAAGGAAGTAGCTGAAGAG 285
||||||||||||||| | ||||| | | |||||||||| |||||||||||||||
Sbjct 293 ACGGAGAAACAAGAGGTTAAAGACG----A--AGCATCGCAGAAAGAAGTAGCTGAAGAG 346
Query 286 AAAAAGAGCATGATTCCACAGAATCTTGGTTCGTTCAAAGAAGAAAGCAGCAAACTTTCC 345
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 347 AAAAAGAGTATGATTCCACAGAATCTTGGTTCATTCAAAGAAGAAAGCAGCAAACTTTCT 406
Query 346 GATCTATCAAACTCCGAGAAGAAATCACTCGATGAACTAAAACATCTTGTTCGAGATGCT 405
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 407 GATCTATCTAATTCCGAGAAGAAATCACTCGATGAACTAAAACATCTAGTTCGAGAAGCT 466
Query 406 TTAGACAATCACCAATTCAGCTCAATCCCTAAACCAGAAAACACCAACAACACACCAGAA 465
||| | ||| ||| | |||| | || | |||||||||||||
Sbjct 467 CTAG------A-CAA-TCA-C-CAAT---T-----------CA-C--CAACACACCAGAA 499
Query 466 GAAGTCAAGATTTGGGGGATCCCGTTGCTCGAAGACGATAGAAGCGACGTCGTTTTACTG 525
|||||||||||||||||||| || || || |||||||||||||||||||||||||| |
Sbjct 500 GAAGTCAAGATTTGGGGGATTCCATTACTTGAAGACGATAGAAGCGACGTCGTTTTGTTA 559
Query 526 AAATTCCTAAGAGCTAGGGATTTCAAGGTGAAAGATTCGTTGGCTATGCTCAAGAACACC 585
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 560 AAATTCCTAAGAGCTAGGGAGTTCAAGGTGAAAGATTCGTTTGCTATGCTCAAGAACACA 619
Query 586 GTTAAATGGAG-AAGAGAGTTCAAGATCGATGAATTGGTTGAGGAAGAACTTGTGGATGA 644
| || ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 620 ATCAAGTGGAGAAAG-GAGTTCAAGATCGATGAATTGGTCGAGGAAGATCTTGTGGATGA 678
Query 645 TCTTGACAAGGTTGTGTTTATGCATGGACACGACCGAGAAGGTCACCCTGTGTGTTACAA 704
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 679 TCTTGACAAGGTTGTGTTTATGCATGGACATGACCGAGAAGGTCACCCTGTTTGTTACAA 738
Query 705 TGTCTATGGTGAGTTTCAAAACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAA 764
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TGTCTATGGTGAGTTTCAGAACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAA 798
Query 765 GAGGAAACATTTCTTGAAGACTAGGATTCAGTTCTTGGAGAGGAGTATAAGGAAGCTAGA 824
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GAGGAAACATTTCTTGAGGACTAGGATTCAGTTCTTGGAGAGGAGTATAAGGAAGCTAGA 858
Query 825 TTTTAGTTCTGGTGGGGTTTCTACTATTTTCCAGGTTAATGATATGAAGAATTCTCCGGG 884
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 859 TTTTAGCTCTGGTGGGGTTTCTACTATTTTTCAGGTTAATGATATGAAGAATTCTCCGGG 918
Query 885 GTTGGGGAAGAAAGAGCTTAGATCAGCTACTAAGCAAGCTGTTGAGTTGCTTCAAGACAA 944
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 919 GTTAGGGAAGAAAGAGCTTAGATCAGCTACTAAGCAAGCTGTTGAGTTGCTTCAGGACAA 978
Query 945 TTACCCTGAGTTTGTCTTCAAACAGGCTTTTATCAATGTTCCTTGGTGGTACCTTGTGTT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TTACCCTGAGTTTGTCTTCAAACAGGCTTTTATCAATGTTCCTTGGTGGTACCTTGTGTT 1038
Query 1005 TTACACTGTGATTGGTCCGTTCATGACACCAAGGTCAAAGAGCAAGCTTGTGTTTGCTGG 1064
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1039 TTATACTGTGATTGGTCCGTTCATGACACCAAGATCAAAGAGCAAGCTTGTGTTTGCTGG 1098
Query 1065 TCCATCACGTTCAGCTGAAACACTTTTCAAATACATATCACCCGAGCAAGTTCCAGTTCA 1124
||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1099 TCCTTCGCGTTCAGCTGAAACCCTATTCAAATACATATCACCCGAGCAAGTTCCAGTACA 1158
Query 1125 GTACGGAGGATTGAGTGTAGATCCTTGCGACTGCAACCCAGACTTTTCGTTGGAAGATTC 1184
|| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1159 ATATGGTGGATTGAGTGTTGATCCTTGCGACTGCAATCCAGACTTTTCGTTGGAAGATTC 1218
Query 1185 AGCCTCAGAGATCACTGTTAAGCCTGGAACAAAACAAACTGTTGAGATCATAATCTATGA 1244
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1219 AGCCTCTGAGATCACTGTTAAGCCCGGAACAAAACAAACTGTTGAGATCATAATCTATGA 1278
Query 1245 GAAATGTGAACTTGTGTGGGAGATAAGGGTAATTGGATGGGAAGTGAGCTACAAGGCCGA 1304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1279 GAAATGTGAACTTGTGTGGGAGATAAGGGTAACTGGATGGGAAGTGAGCTACAAGGCTGA 1338
Query 1305 ATTTGTGCCGGAAGAAAAAGATGCTTACACGGTGGTTATACAGAAACCAAGGAAGATGAG 1364
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1339 ATTTGTGCCGGAAGAGAAAGATGCTTACACGGTGGTTATACAAAAACCGAGGAAGATGAG 1398
Query 1365 ACCGTCCGATGAACCGGTGTTAACCCATAGCTTCAAAGTGAATGAGCTTGGCAAGGTTTT 1424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 ACCATCCGATGAACCGGTGTTAACCCATAGCTTCAAAGTGAATGAGCTTGGCAAGGTTTT 1458
Query 1425 ACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAAGCTCGTTTACAGGTTCAATGTCAA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 ACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAAGCTCGTTTACAGGTTCAATGTCAA 1518
Query 1485 ACCTCTCTAA 1494
||||||||||
Sbjct 1519 ACCTCTCTAA 1528
> AT4G09160.1 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr4:5839683-5842394
FORWARD LENGTH=2321
Length=2321
Score = 438 bits (237), Expect = 6e-122
Identities = 777/1030 (75%), Gaps = 68/1030 (7%)
Strand=Plus/Plus
Query 493 CTCGAAGACGATAGAAGCGACGTCGTTTTACTGAAA-TTCCTAAGAGCTAGGGA-TTTCA 550
||| ||||||| |||| |||||||||||| | ||| || |||||||| || || ||| |
Sbjct 1075 CTCAAAGACGACAGAACCGACGTCGTTTT-GTTAAAGTTTCTAAGAGCAAGAGACTTTAA 1133
Query 551 AGGTGAAAGATTCGTTGGCT--ATGCTCAAGAACAC-CGTTAAATGGAGAAGAGAGTTCA 607
| | |||| | || || ||||| || || || | | ||||||||| || ||||
Sbjct 1134 ACCT-CAAGAAGC-TT-ACTCAATGCTAAACAAGACAC-TCCAATGGAGAATCGACTTCA 1189
Query 608 AGATCGATGA-ATTGGTTGAGGAAGAA-CT-TGTGGATGATCTT-GACAAGGTTGTGTTT 663
| ||||| || || | || ||| || || || || ||| || ||||| ||||||||
Sbjct 1190 ACATCGAAGAGCTT-CTAGACGAA-AACCTCGGT-GACGAT-TTAGACAAAGTTGTGTTC 1245
Query 664 ATGCATGGACACGACCGAGAAG-GTCACCCTGTGTGTTACAATGTCTATGGTGAGTTTCA 722
||||| ||||| || | || || ||| ||||| |||||||||||||| |||||||||||
Sbjct 1246 ATGCAAGGACAAGA-CAAGGAGAATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCA 1304
Query 723 AAACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAAGAGGA-AACATTTCTTGA 781
||||| || |||||| | || |||||||| ||||| || |||| || ||| ||||||
Sbjct 1305 GAACAAAGATCTTTATCAGAAAACGTTTTCAGATGAAGAGAAGA-GAGAACGGTTCTTG- 1362
Query 782 AGACT--AGGATTCAG-TTCTTGGAGAGGAGTATAAGGAAGCTAGATTTTAGT-TCTGGT 837
||| | ||||||||| ||||| || | |||||| ||||| || |||||| || |||||
Sbjct 1363 AGA-TGGAGGATTCAGTTTCTT-GAAAAGAGTATCAGGAATCTTGATTTT-GTAGCTGGT 1419
Query 838 GGGGTTTCTACTAT-TTTCCAGGTTAATGATATGAAGAATTCTCC-GGGGTTGGGGAAGA 895
|| ||||| || || | | || || |||||| | ||||||||||| || | || ||||
Sbjct 1420 GGTGTTTCCACGATATGT-CAAGTAAATGATCTTAAGAATTCTCCAGGACCT-GGTAAGA 1477
Query 896 AAGAGCTTAGATCAGCTACTAAGCAAGCTGTTGAGT-TGCTTCAAGACAATTACCCTGAG 954
|||||||| | |||||||||||||||| || | | | |||||||||||||||||||||
Sbjct 1478 CTGAGCTTAGGTTAGCTACTAAGCAAGCTCTTCA-TCTTCTTCAAGACAATTACCCTGAG 1536
Query 955 TTTGTCT-TCAAACAGGCTTTT-ATCAATGTTCCTTGGTGGTACCTTGTGTT-T-TACAC 1010
||||||| | |||||| | || ||||||||||| ||||||||||||| ||| | || |
Sbjct 1537 TTTGTCTCT-AAACAGA-TATTCATCAATGTTCCATGGTGGTACCTTGCGTTCTATAGAA 1594
Query 1011 TGTGATTGGTCCGTTCATGACACCAAGGTCAAAGAGCAAGCTTGTGTTT-GCTGGTCCAT 1069
| | ||| |||| || ||| ||| ||||||||||||||| || || ||| || ||||| |
Sbjct 1595 T-T-ATTAGTCCTTTTATGTCACAAAGGTCAAAGAGCAAACTAGT-TTTCGCAGGTCCTT 1651
Query 1070 CACGTTCAGCTGAAACACTTTTCAAATACATATCACCCGAGCAAGTTCCAGTTCAGTACG 1129
|| | || || ||||| ||| |||| |||||||||||||| || || || |||||||| |
Sbjct 1652 CAAGATCTGCAGAAACCCTTCTCAAGTACATATCACCCGAACATGTCCCGGTTCAGTATG 1711
Query 1130 GAGGATTGAGTGTAGATCCTTGCGACTGCAACCCAGACTTTT-CGTTGGAAGAT-TCAGC 1187
| ||| | ||||| ||| |||||| || ||| | || ||| | || ||| || ||
Sbjct 1712 GTGGACTAAGTGTGGATAATTGCGAGTGTAACTCGGA-TTTCACACACGATGATATC-GC 1769
Query 1188 CT-CAGAGATCACTGTTAAGCCTGGAACAAAACAAACTGTTGAGATCATAATCTATGAGA 1246
| | ||||| |||||||| || || |||||||| || ||||| || | || ||||
Sbjct 1770 -TACCGAGATTACTGTTAAACCAACTACTAAACAAACCGTCGAGATTATTGTTTACGAGA 1828
Query 1247 AATGTG-AACTTGTGTGGGAGATAAGGGTAATTGGATGGGAAGTGA-GCTACA-AGGCCG 1303
||||| || | |||||||||||||| ||| | |||||||| || | || || | |
Sbjct 1829 AATGTACAA-TCGTGTGGGAGATAAGAGTAGTGGGATGGGAGGTTTCG-TATGGAG-CGG 1885
Query 1304 AATTTGTGCCGGAAGAA-AAAGATGCTTACACGGTGGTTATACAGAAACCAAGGAAGATG 1362
| ||||||||||| ||| ||||| | || || ||| | || |||||||| |||||||||
Sbjct 1886 AGTTTGTGCCGGA-GAACAAAGAAGGGTATACAGTGATCATTCAGAAACCGAGGAAGATG 1944
Query 1363 AGACCGTCCGATGAACCGGTGTTAACCCATAGCTTCAAAGT-GAATGA-GCTTGGCAAGG 1420
| || |||||| |||| | | |||||||||||||| | | || | |||||| ||
Sbjct 1945 ACTGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTTGGA-GAAG-TTGGCA-GG 2001
Query 1421 -TTTTACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAA-GCTCGTTTACAGGTTCAA 1478
|||| || || || || ||||| || || | ||||| || ||| | |||||||||||
Sbjct 2002 ATTTTGCTAACTGTTGATAACCCGACTTCGACCAAGAA-AATGCTTATCTACAGGTTCAA 2060
Query 1479 TGTCAAACCT 1488
|| || |||
Sbjct 2061 GGTTAAGCCT 2070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5