BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316211 Length=1935 Score E Sequences producing significant alignments: (Bits) Value AT1G72460.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3009 0.0 > AT1G72460.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:27279510-27281533 FORWARD LENGTH=1935 Length=1935 Score = 3009 bits (1629), Expect = 0.0 Identities = 1836/1938 (95%), Gaps = 6/1938 (0%) Strand=Plus/Plus Query 1 ATGGCCGTGGCCTGGCTAATCTGGCCGTTCGTGCTATCTCTAACAGCACTTTCTGCGAAT 60 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCGTGGCTTGGCTAATCTGGCCAATCGTGCTATCTCTAACAGCACTTTCTGCGAAT 60 Query 61 TCGATAACCGAATCAGAATCTTTGTTGAAATTCAAGAAGTCATTAACCAACACCAAGTCT 120 ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| Sbjct 61 TCGATAACCGAATCAGAATCTTTATTGAAATTCAAGAAGTCCTTAAACAACACCAAGTCT 120 Query 121 CTTGATTCTTGGACACCAGATTCAGAGCCTTGTGGAGAAAGCCAACGATGGATCGGATTG 180 |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| Sbjct 121 CTTGATTCTTGGACACCAGAGTCAGAACCTTGTGGAGCAAGCCAACGATGGATCGGATT- 179 Query 181 A-TATGCAACAAAAACTCTGTCTTTGGCCTTCAAATCGAACAGATGGGTCTATCAGGAAA 239 | | |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 180 ACTCTGCAACAAAAACTCTGTCTTTGGCCTCCAGATCGAACAAATGGGTCTATCAGGAAA 239 Query 240 AGTTGATGTCGCTCCATTAAAAGACTTACCCTCTTTACGCACCATCAGCATAATGAACAA 299 ||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||| Sbjct 240 AGTTGATGTCGCTCCGTTAAAAGACCTACCATCTTTACGCACCATAAGCATAATGAACAA 299 Query 300 CTCTTTCTCCGGTGACATACCCGAGTTTAACAGATTAACCGCTCTGAAGTCGCTTTACAT 359 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTCTTTCTCTGGTGACATACCCGAGTTTAACAGATTAACCGCTCTGAAGTCGCTTTACAT 359 Query 360 ATCAGGAAATCGATTCTCTGGTAACATCCCTTCTGATTATTTCGAAACAATGGTATCGCT 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 360 ATCAGGAAATCGATTCTCTGGTAACATTCCTTCTGATTATTTCGAAACAATGGTGTCGCT 419 Query 420 AAAGAAAGCGTGGCTGTCAAACAACGAGTTCTCTGGTCTCATTCCTATCTCATTGGCAAC 479 ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 420 AAAGAAAGCTTGGCTGTCAAACAACCATTTCTCTGGTCTCATTCCTATCTCATTGGCAAC 479 Query 480 TACATTGCCAAATCTCATAGAGTTACGCCTCGAAAACAATCAGTTCATCGGAAGTATACC 539 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| Sbjct 480 TACATTGCCAAATCTCATTGAGTTACGCCTCGAAAATAATCAATTCATCGGGAGTATACC 539 Query 540 TAATTTCACACAAACGACTTTAGCTATTGTTGATCTATCAAACAACCAACTAACCGGAGA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TAATTTCACACAAACGACTTTAGCTATTGTTGATCTATCAAACAACCAACTAACCGGAGA 599 Query 600 AATACCTCCCGGTTTGTTGAAATTCGACGCCAAGAGTTTTGCGGGGAATTCTGGCCTTTG 659 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 600 AATACCTCCCGGTTTGTTGAAATTCGACGCGAAGACTTTTGCGGGGAATTCTGGCCTTTG 659 Query 660 TGGCGCGAAGCTATCAACTGCATGCCCACAACCAAAAAATTCGACTGCATCGATAACGAT 719 || || |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 660 CGGTGCCAAGCTATCCACTCCATGCCCACAACCAAAAAATTCGACTGCATCCATAACGAT 719 Query 720 AGAAGGAACAATGAAAGATGCAAATAAGAGCAAATACTTTTTAGCATTCGGGACATTAGG 779 |||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 720 AGAAGGAACAATGAAAGATGCAAATAAGAGCAAATACTTTCTAGCATTCAGCACATTAGG 779 Query 780 AGTGCTTCTTATCGTCGTGCTTGTCTCCTTAGCTTTCCGaaaaaagaaaaaGAAGAGACG 839 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 780 AGTGCTTCTTATCGTCGTCCTTGTCTCCTTAGCTTTCAGAAAAAAGAAAAAGAAGAGACG 839 Query 840 GAGGAAGAAGGCACGGCGTACCTCTGAACAAGACAATAGTGATGACCAACAAATTCAGGT 899 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 840 GAGGAAGAAGGCACGTCGTACCTCTGAACAAGACAATAGTGACGACCAACAAATTCAGGT 899 Query 900 AACTGTTGAGGGATCAAATAGCTCAAGGCAAAGTAAGAGCAGTCGGTCCGGCGAATTGAA 959 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 900 AACTGTTGAGGGATCAAATAGCTCAAGGCAGAGTAGGAGCAGTCGGTCCGGCGAATTGAA 959 Query 960 TAAAGGTGTGGCTGGGACGA-CAGACCTAGTGATGGTCAACAAGGAAAAAGGTGTTTTTG 1018 |||||| ||||| ||||| | |||||||||| ||||| |||||||||||||||||||| Sbjct 960 TAAAGGAGTGGCGGGGAC-ATCAGACCTAGTTATGGTGAACAAGGAAAAAGGTGTTTTCC 1018 Query 1019 GTTTATCGGACTTGATGAAAGCGGCGGCTCACGTGCTTGGTAATCCCGGCGGAGGAAGCA 1078 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1019 GTTTATCAGACTTGATGAAAGCGGCGGCTCACGTGCTTGGTAATCCCGGCGGTGGAAGCA 1078 Query 1079 GCCGTCCTAGCAGTAGCGGAGGGGTGGGATCTGCGTACAAAGCGGTTCTTTCAAACGGTG 1138 |||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1079 ACCGTCCAAGAAGTAGCGGAGGCGTGGGATCTGCCTACAAAGCGGTTCTTTCAAACGGTG 1138 Query 1139 TCACGGTAGTGGTGAAACGTGTGACAGTAATGAACCAAGTGAGTGTTGACGTATTCGACA 1198 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1139 TCACGGTAGTGGTGAAACGTGTGACGGTAATGAATCAAGTGAGTGTTGACGTATTCGACA 1198 Query 1199 AGGAGATTAGGAAACTAGGAAGCTTGCGACACAAGAACATATTAACGCCTCTAGCTTACC 1258 ||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| Sbjct 1199 AGGAGATTAGGAAACTAGGAAGCTTGCAACACAAGAACGTATTAACGCCCCTAGCTTACC 1258 Query 1259 ATTTCCGACGAGACGAGAAATTGCTAGTGTTTGAATTCGTTCCTAATCTGAGTTTGCTTC 1318 ||||||||| ||||||||||||||||||||| ||||| ||||||||| ||| |||||||| Sbjct 1259 ATTTCCGACAAGACGAGAAATTGCTAGTGTTCGAATTTGTTCCTAATTTGAATTTGCTTC 1318 Query 1319 ACCGATTACACGGCGATCACGAAGAATTTCAACTAGATTGGCCTTCTCGACTCAAAATCA 1378 ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1319 ACCGATTACACGGAGACCACGAAGAATTTCAATTAGATTGGCCTTCTCGACTCAAAATCA 1378 Query 1379 TTCAAGGAATCGCTAGAGGAATGTGGTATCTCCATAGAGAATTAGGGTTTTTAAACCTAC 1438 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1379 TTCAAGGAATCGCTAGGGGAATGTGGTATCTCCATAGAGAATTAGGGTTTCTAAACCTAC 1438 Query 1439 CACATGGAAACCTAAAATCGAGCAATATATTTCTTGCGGAAGACGGCGAGCCACTCATCT 1498 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1439 CACATGGAAACCTAAAATCAAGCAATATATTTCTTGCGGAAGACGGCGAGCCACTCATCT 1498 Query 1499 CCGAATTCGGACTTCAAAAACTAATCAATCCAGACGCTCAATCTCAATCTCTCGTTGCAT 1558 ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 1499 CCGAATTTGGACTTCAAAAACTAATCAATCCCGACGCTCAATCTCAATCTCTCGTCGCGT 1558 Query 1559 ATAAATCTCCAGAAGCGGATCGTGATGGAACCGTCTCTGCAAAATCTGATGTGTTTAGTT 1618 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1559 TTAAATCTCCAGAAGCGGATCGTGATGGAACCGTCTCTGCGAAATCTGATGTATTTAGTT 1618 Query 1619 TCGGAGTCGTGGTTCTTGAGATCTTGACCGGAAAATTCCCGTCTCAATACGCCGGTTTGA 1678 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1619 TCGGAGTCGTGGTACTTGAGATCTTGACCGGAAAATTCCCGTCTCAATACGCTGGTTTGA 1678 Query 1679 ACAGAGCCGGTGGGGCAAATTTGGTGGAGTGGATT-GGATCCGCCGTGGTACAAGGTGGT 1737 ||||||||||||||||||||||||| |||||| || || ||||| ||| |||||||||| Sbjct 1679 ACAGAGCCGGTGGGGCAAATTTGGTTGAGTGG-TTAGGCTCCGCATTGGAACAAGGTGGT 1737 Query 1738 TGGATGGATCTGCTTCATCCGACGGTGGTTACAGCCGCCGCTGAAGATAAAATTTTAGAG 1797 |||||||||||||||||||||| |||||| || ||||||||||||||||||||| | ||| Sbjct 1738 TGGATGGATCTGCTTCATCCGATGGTGGTAACCGCCGCCGCTGAAGATAAAATTATGGAG 1797 Query 1798 GAGGAAATTGAGAACGTTTTAAGAATCGGTGTGAGATGTACCGGAGAAGATCCAGATCAG 1857 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1798 GAGGAAATTGAGAACGTTTTAAGGATCGGTGTGAGATGTACCAGAGAAGATCCAGATCAG 1857 Query 1858 AGACCGAATATGACTGAAGTCGTCGATGAACTGACTATCGAAGATTCTAACGACGACTTT 1917 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1858 AGACCGAATATGACTGAAGTCGTTGATGAACTGACTATTGAAGATTCTAACGACGACTTT 1917 Query 1918 ATCACCATAGAAACTTAG 1935 |||||||||||||||||| Sbjct 1918 ATCACCATAGAAACTTAG 1935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95832840405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5