BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316221
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72570.1 | Symbols: | Integrase-type DNA-binding superfamil... 1576 0.0
AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superf... 263 3e-69
> AT1G72570.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:27331381-27333698 FORWARD LENGTH=1248
Length=1248
Score = 1576 bits (853), Expect = 0.0
Identities = 1076/1180 (91%), Gaps = 29/1180 (2%)
Strand=Plus/Plus
Query 123 CCG-TGTTTGGGGATATGATATTAACCTTGatcatcatcatcatcatcaACATGATGAAG 181
||| ||||||| ||||||||||||| ||| | |||||||||||||| |||| || |
Sbjct 83 CCGATGTTTGGAGATATGATATTAA-CTT--TGATCATCATCATCAT---GATGAAGACG 136
Query 182 TGCCGAAGGTGGAGGATTTGCTCTCAAACTCTCATCAGACCGAGTATCCT-TTGACCAAT 240
| || |||||||| ||| | ||||||||||||||||| |||||||||||| | ||| ||
Sbjct 137 TTCCAAAGGTGGAAGATCTCCTCTCAAACTCTCATCAAACCGAGTATCCTATAAACC-AT 195
Query 241 AACCAAACCAATGTCAACTGCACCACCGTGGTTAACAGATTAAACCCACCCGGTTACCTT 300
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 196 AACCAAACCAATGTCAACTGCACCACTGTGGTTAACAGGTTAAACCCACCCGGTTACCTT 255
Query 301 CTCCACGAACAAACCGTAGTTACACCACAATACCCGAACCTAGATCCAAACCTAACCCAT 360
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | | ||
Sbjct 256 CTCCACGACCAAACCGTAGTTACACCACATTACCCGAACCTAGATCCGAACCTTAGCAAT 315
Query 361 GATTATGGAGGTTTTGAGAGGGTCGGTTCGGTCTCGGTTTTCAAATCTTGGTTAGGGCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 316 GATTATGGAGGTTTTGAGAGGGTCGGTTCGGTCTCGGTTTTCAAATCTTGGTTAGAGCAA 375
Query 421 GGCACTCCAACATTTCAACTCTCGAGTAC-TTACGTCACTGAAGAGGGTGGTACGAGCAA 479
||||||||| |||| | |||||||||| | |||||| |||||||||| ||||||||||||
Sbjct 376 GGCACTCCAGCATTCCCACTCTCGAGT-CATTACGTTACTGAAGAGGCTGGTACGAGCAA 434
Query 480 TAATATTAGTCATTTTAGTAACGAAGAGACTGGTTATAACACCAATGGCTCGAGGCTATC 539
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 435 TAATATTAGTCATTTTAGTAACGAAGAGACTGGTTATAACACCAATGGCTCAATGCTATC 494
Query 540 ATTGGCTTTGAGCCATGGGGCTTGTTCTGATTTGATCAACGAAACGAATGCATCTGTAGT 599
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |
Sbjct 495 ATTGGCTTTGAGCCATGGGGCTTGTTCTGATTTGATCAACGAATCGAATGTATCCGCA-- 552
Query 600 GCCGGTAGAAGAACCAGTTAAAATAGATGAGAAGCGGAAGAGATTGACTGGCAAATCTCA 659
| ||| |||||||| ||||| ||||||||||||||||||||||| || ||| ||||
Sbjct 553 -CGGGTCGAAGAACCGGTTAAGGTAGATGAGAAGCGGAAGAGATTGGTTGTTAAACCTCA 611
Query 660 GG-AGAAGGATTTGGTTCCTCGGAAGTCGGTTGATAGTT-TCGGACAAAGAACTTCTCAG 717
|| | ||||| | ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 612 GGTA-AAGGAATCCGTTCCTCGGAAGTCGGTTGATAGTTAT-GGACAAAGAACTTCTCAG 669
Query 718 TATCGTGGAGTTACAAGGCATAGATGGACAGGGAGATATGAAGCTCACTTATGGGATAAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TATCGTGGAGTTACAAGGCATAGATGGACAGGGAGATATGAAGCTCACTTATGGGATAAT 729
Query 778 AGCTGTAAGAAAGAGGGTCAGACAAGGAAAGGAAGACAAG-G-A----GG-G--TATGAT 828
||||||||||| ||||| |||||||||| ||||||||||| | | || | ||||||
Sbjct 730 AGCTGTAAGAAGGAGGGACAGACAAGGAGAGGAAGACAAGTGTATCTTGGAGGGTATGAT 789
Query 829 GATGAGAAGAAAGCAGCGAGGGCTTATGATTTAGCGGCTCTGAAGTATTGGGGTCCTACC 888
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 790 GAGGAGGAGAAAGCAGCGAGGGCATATGATTTAGCGGCTCTGAAGTATTGGGGTCCTACC 849
Query 889 ACTCACTTAAATTTCCCTTTGAGTAATTACGAAAAGGAGATCGAGGAACTCAATAACATG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 ACTCACTTAAATTTCCCTTTGAGTAATTACGAAAAGGAGATCGAGGAACTCAATAACATG 909
Query 949 AATAGGCAAGAATTTGTTGCCATGCTGAGGAGGAACAGTAGCGGGTTTTCGAGGGGAGCT 1008
||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 910 AATCGGCAAGAATTTGTTGCCATGTTGAGGAGGAATAGCAGCGGGTTTTCGAGGGGAGCT 969
Query 1009 TCAATTTACAGAGGAGTTACAAGGCATCATCAACATGGAAGATGGCAAGCTAGAATTGGA 1068
|| | || |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 970 TCCGTGTATAGAGGAGTTACAAGGCATCATCAACATGGAAGGTGGCAAGCCAGAATTGGA 1029
Query 1069 AGAGTTGCTGGAAACAAAGACTTGTACCTTGGCACATTTAGCACGCAAGAAGAAGCAGCA 1128
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1030 AGAGTTGCTGGAAACAAGGACTTGTACCTTGGAACATTTAGCACGCAAGAAGAAGCAGCG 1089
Query 1129 GAGGCGTACGATATCGCGGCAATTAAATTCAGAGGCCTAAATGCTGTAACTAATTTCGAT 1188
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1090 GAGGCGTACGATATCGCGGCAATTAAATTCAGAGGCCTAAACGCTGTAACCAATTTCGAT 1149
Query 1189 ATTAACAGATATGACGTGAAGAGGATATGTTCAAGCTCTACGATT-TTCAATAGCGACCA 1247
|| || |||||||||||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 1150 ATAAATAGATATGACGTGAAGAGGATATGTTCAAGCTCAACGATTGTTGA-TAGCGACCA 1208
Query 1248 GGCCAACCGTTCTCCCACCAGCTCTGGCTCCGGCCAATAA 1287
|||||| | ||||||||||||||||||| ||||||| |||
Sbjct 1209 GGCCAAACATTCTCCCACCAGCTCTGGCGCCGGCCACTAA 1248
Score = 93.5 bits (50), Expect = 5e-18
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 ATGAACAAATGGTTGGGGTTTTCATTGACACCTCCTTTGAGAATCTGTGATAGTGAAGAA 60
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAAGAAATGGTTGGGATTTTCATTGACACCTCCTTTGAGAATCTGCAATAGTGAAGAA 60
Query 61 GA 62
||
Sbjct 61 GA 62
> AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfamily
protein | chr1:18977284-18980618 FORWARD LENGTH=2136
Length=2136
Score = 263 bits (142), Expect = 3e-69
Identities = 416/541 (77%), Gaps = 47/541 (9%)
Strand=Plus/Plus
Query 696 TTTCGGACAAAGAACTTCTCA-GTATCGTGGAGTTACAAGGCATAGATGGACAGGGAGAT 754
||| |||||| |||| ||| | ||||||||||||||||| ||||||||||| || ||||
Sbjct 665 TTTTGGACAACGAACCTCT-ATCTATCGTGGAGTTACAAGACATAGATGGACCGGTAGAT 723
Query 755 ATGAAGCTCA-CTTATGGGATAATAGCTGTAAGAA-AGAGGGTCAGA-CAAGGAAAGGAA 811
|||||||||| ||| ||||||||||||||| |||| ||| || || | ||||||||||||
Sbjct 724 ATGAAGCTCATCTT-TGGGATAATAGCTGT-AGAAGAGAAGGACA-ATCAAGGAAAGGAA 780
Query 812 G---A--C-A---AGGAGGGTATGATGATG-AGAAGAAAGCAGCGAGGGCTTATGATTTA 861
| | | | ||| |||||||| | | || |||||||||| || || |||||| ||
Sbjct 781 GACAAGTCTACTTAGGTGGGTATGACAAAGAAG-AGAAAGCAGCCAGAGCATATGATCTA 839
Query 862 GCGGCTCTGAAGTATTGGGGT--C-CTACCACTCACTTAAATTTCCCTTTGAGTAATTAC 918
|| || || || ||||||||| | |||| ||| || || ||| || | | ||| |||
Sbjct 840 GCTGCACTTAAATATTGGGGTCCCTCTACTACT-AC-CAACTTT-CCGATAACTAACTAC 896
Query 919 GAAAAGG-AGATCGAGGA-ACTCAATAACATGAATAGGCAAGAATTTGTTGCCATGC--T 974
|| |||| || | ||||| | | || ||||||| || ||||| |||| || | | | |
Sbjct 897 GAGAAGGAAG-TAGAGGAGA-TGAAAAACATGACGAGACAAGAGTTTG-TGGC-TTCTAT 952
Query 975 GAGGAGGAACAGTAGCGGGTTTTCGAGGGGAGCTTCAATTTA-CAGAGGAGTTACAAGGC 1033
|| ||||| |||||||| || ||| | || || || || || | | ||||| |||||||
Sbjct 953 AAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATC-GTGGAGTAACAAGGC 1011
Query 1034 ATCATCAACATGGAAGATGGCAAGCTAGAATTGGAAGAGTTGCTGGAAACAAAGA-CTTG 1092
||||||||||||||||||||||||| || || || ||||||||||||||||||| ||
Sbjct 1012 ATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAGATCTC- 1070
Query 1093 TACCTTGGCA-CATTTAGCACGCAAGAAGAAGCAGCAGAGGCGTACGATATCGCGGCAAT 1151
||| |||| | |||| |||||| | |||||||||||||| || || || || || || ||
Sbjct 1071 TAC-TTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTGCGAT 1129
Query 1152 TAAA-TT-CAGAGGCCTAAATGCTGTAACTAA-TTTCGATATTAA-CAGATATGACGTGA 1207
||| || | |||| ||||| || || || || ||| || || || | | ||||| ||||
Sbjct 1130 -AAAGTTTC-GAGGTCTAAACGCGGTTACAAACTTT-GAGATAAATCGG-TATGATGTGA 1185
Query 1208 A 1208
|
Sbjct 1186 A 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5