BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316264
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73140.1 | Symbols: TBL31 | Plant protein of unknown functio... 1989 0.0
> AT1G73140.1 | Symbols: TBL31 | Plant protein of unknown function
(DUF828) | chr1:27502133-27503819 REVERSE LENGTH=1318
Length=1318
Score = 1989 bits (1077), Expect = 0.0
Identities = 1189/1244 (96%), Gaps = 4/1244 (0%)
Strand=Plus/Plus
Query 1 ATGTCGATACAAACTTCTGCAGCTTC-ACGAATGATTCACTCCATCTTTCAAGTTCTGCT 59
||||| |||||||| |||||| ||| | | |||||||| |||||||| |||||| ||||
Sbjct 77 ATGTCTATACAAACAACTGCAGATTCGA-GGATGATTCAATCCATCTTCCAAGTTGTGCT 135
Query 60 TGTTAGTCTTCTAGTTCTAGGATCCGCCAGATGGATCCTTGATGAACTCAAAAGCAAAGA 119
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 136 TGTTAGTCTTCTAGTTCTAGGATCCGTGAGATGGATACTTGATGAACTCAAGAGCAAAGA 195
Query 120 AAGTCGAATATTCC-AACTATATCGTTTCAGACAGAAAGAGGCAGTGTTTGTAACCAAAG 178
|||||||||| ||| |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 196 AAGTCGAATA-TCCAAACTATATGGTTTCAGACAGAAAGAGGCAGTGTTTGTCACTAAAG 254
Query 179 AGGATCAGCTTGATGAGAGCTGCAATGTCTTTGAAGGACAATGGGTTTGGGACAACGTCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 255 AGGATCAGCTTGATGAGAGCTGCAATGTCTTTGAAGGACAATGGGTTTGGGACAATGTCT 314
Query 239 CTTACCCTCTTTATACTGAGAAGAGCTGTCCTTACTTAGTCAAACAAACAACATGTCAAC 298
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 315 CTTATCCTCTTTATACAGAGAAGAGCTGTCCTTATTTAGTCAAACAAACAACATGTCAAC 374
Query 299 GAAATGGACGGCCTGATTCTTATTACCAGAGCTGGAGATGGAAACCGAGCTCATGCGACT 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 375 GAAATGGACGGCCTGATTCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACT 434
Query 359 TGCCCAGGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTTCA 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGCCAAGGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTTCA 494
Query 419 TAGGAGACTCAGTGCAGAGAAGCACGTTCGAGTCAATGGTCTGTATGGTACAATCAGTTA 478
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 495 TAGGAGACTCAGTGCAGAGAAGCACGTTCGAGTCAATGGTCTGTATGGTGCAATCAGTAA 554
Query 479 TTCCTGACAAGAAGAAGTCCTTTCACAGGATTCCTCCTATGAAGATCTTCAAAGCTCAGG 538
||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 555 TTCCTGAGAAGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGG 614
Query 539 AATACAATGTATCCATCGAGTATTACTGGGCACCTTTTATCGTGGAATCAATTTCAGATC 598
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 615 AATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATC 674
Query 599 ATGCAACTAATCATACAGTTCACAAAAGGTTGGTTAACCTTGACGCCATTGAAAAACATA 658
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 675 ATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGCTCGACGCCATTGAAAAACATA 734
Query 659 GCAAGAGCTGGGAAGGCGTTGATGTTCTAGTCTTTGAGAGCTATGTATGGTGGATGCATC 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GCAAGAGCTGGGAAGGGGTTGATGTTCTAGTCTTTGAGAGCTATGTATGGTGGATGCATC 794
Query 719 AACCTAAGATCAATGCAACATATGGAGATACTAGTGAAGTCCGAGAGTATAATGTGACGA 778
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 795 AACCTAAGATCAATGCAACGTATGGAGATACCAGTGAAGTCCGAGAGTATAATGTGACGA 854
Query 779 CTGCTTATAAAATGGCGTTAGAAACATGGGCCAAGTGGTTTGAGACGAAGATCAATCCCG 838
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 855 CTGCTTATAAAATGGCGTTAGAAACATGGGCCAAGTGGTTTAAGACGAAGATCAATTCCG 914
Query 839 AGAAGCAAAGAGTTTTCTTCACAAGTATGTCTCCGACTCATCTATGGAGCTGGGAGTGGA 898
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 915 AGAAGCAAAAAGTTTTCTTCACGAGTATGTCTCCGACTCATCTATGGAGCTGGGAGTGGA 974
Query 899 ATCCAGGGAGCGATGGAACCTGTTATGATGAGTTATATCCAATAGACAAAATATCATATT 958
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 975 ATCCAGGGAGCGATGGAACCTGTTATGATGAGTTATATCCAATAGACAAAAGATCATATT 1034
Query 959 GGGGTACAGGATCAAATCAAGAAATCATGAAGATTGTTGGTGATGTTCTAAGCAGAGTCG 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1035 GGGGTACAGGATCAAATCAAGAAATCATGAAGATTGTTGGTGATGTTCTAAGCAGAGTTG 1094
Query 1019 GAGAAAATGTCACATTCCTGAACATTACGCAACTGTCAGAATATAGGAAGGATGGACATA 1078
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1095 GAGAAAATGTCACGTTCCTGAACATTACGCAACTGTCGGAATACAGGAAAGATGGACATA 1154
Query 1079 CGACTGTCTATGGCGAACGGAGAGGGAAGCTCTTGACAAAGGAACAGAGAGCTGATCCGA 1138
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CGACTGTGTATGGAGAACGGAGAGGGAAGCTCTTGACAAAGGAACAGAGAGCTGATCCGA 1214
Query 1139 AAAACTATGGAGATTGCATCCACTGGTGTTTGTCAGGAGTTCCTGATACATGGAACGAGA 1198
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1215 AAAACTATGGAGATTGCATCCACTGGTGTTTGCCAGGAGTTCCTGATACATGGAATGAGA 1274
Query 1199 TTCTCTATGCATATTTGCTTCGCAGTCACCGCAATTTCTTTTGA 1242
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1275 TTCTCTATGCATATTTGCTTCGCAGTCACCGCAATTTCTTCTGA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5