BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316265 Length=1350 Score E Sequences producing significant alignments: (Bits) Value AT1G73150.1 | Symbols: GTE3 | global transcription factor group... 1940 0.0 AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing pr... 403 2e-111 > AT1G73150.1 | Symbols: GTE3 | global transcription factor group E3 | chr1:27504112-27506112 REVERSE LENGTH=1717 Length=1717 Score = 1940 bits (1050), Expect = 0.0 Identities = 1285/1391 (92%), Gaps = 46/1391 (3%) Strand=Plus/Plus Query 1 ATGGCGTCTGGTCATATAGCCGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGACTGAT 60 ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 117 ATGGCGTCTGGTCCTATAGCTGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGAGTGAT 176 Query 61 AGTGGCAACAAAAGCCAAAAACGA-CCGAAGCCCACGATGGCGAAGTCGAATTCGCTTGG 119 |||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||| Sbjct 177 AGTGGCAACAAAAGCCAAAAACGATCC-AAGCCCACGGTGGCGAATTCGAATTCGCTTGG 235 Query 120 GTCGGAAGATAATCATCAGATGATGAAGATAAGTTTGAGCTCAATTTCGAAGCTTGAAGT 179 || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 236 GTTGGAAGATAATCATCAGATGATGAAGATAAGTTTAAGCTCAATTTCCAAGCTTGAAGT 295 Query 180 TAGAAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAGCG 239 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 296 TAGGAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAACG 355 Query 240 ACTCGAA-C-C------ACAA----GCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 287 |||||| | | |||| ||||||||||||||||||||||||||||||||||| Sbjct 356 GCTCGAACCACAAGGTAACAACTTCGCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 415 Query 288 CGGTGGTAAG-AAGAGTGGAGTACATGGAGCTG--G-TGATAAAGGTACTGTTCAGATCT 343 |||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||| | Sbjct 416 CGGTGGTAAGAAAG-GTGGAGTACATGGAGCTGCTGCTGATAAAGGTACTGTTCAGATTT 474 Query 344 TGAAGAGCTGCAACAATTTGCTTACGAAATTAATGAAGCATAAGTCTGGATGGGTTTTCA 403 ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| Sbjct 475 TGAAGAGCTGCAACAATTTGCTTACCAAGTTAATGAAGCATAAGTCTGGATGGATTTTCA 534 Query 404 ATACTCCAGTTGATGCAGTTATGCTTGGTTTACATGATTATCACAATATTGTTGAGAAGC 463 ||||||||||||||| ||||| |||||||||||||||||||||||||||| || || ||| Sbjct 535 ATACTCCAGTTGATGTAGTTACGCTTGGTTTACATGATTATCACAATATTATTAAGGAGC 594 Query 464 CTATGGATCTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTGGTATAAGTCACCATTGG 523 |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 595 CTATGGATTTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTTGTATAAGTCACCTTTGG 654 Query 524 AGTTTGCTGAGGATGTGAGACTTACTTTTAACAATGCAATGCTGTATAATCCCGTGGGGC 583 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 655 AGTTTGCTGAGGATGTCAGACTTACTTTTAACAATGCAATGCTGTATAATCCTGTGGGGC 714 Query 584 ATGATGTGCATCATATGGCTGAGTTTTTGTTGAATCTGTTTGAAGAGAAATGGGCGCCTC 643 |||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 715 ATGATGTGTATCATATGGCTGAGATTTTGTTGAATCTGTTTGAAGAGAAATGGGTGCCTC 774 Query 644 TTGAAACGCAGTATGGA-TTACTTAATAGGAAGCAACAACCAGTCCGTGATATCGATCTC 702 |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| || Sbjct 775 TTGAAACGCAGTAT-GAGTTACTTATTAGGAAGCAACAACCAGTCCGTGATATCGATTTC 833 Query 703 CATGCTCCTGTTTCAACAAACACTCATAACATAGA---G---CCATT-TCCG-T--T--A 750 |||||||||||||| |||||||||||||| |||| | || || ||| | | | Sbjct 834 CATGCTCCTGTTTCGACAAACACTCATAATGTAGAGGCGTTACCGTTACCCGCTCCTACA 893 Query 751 -----CCTG----CTCCTCCTCCTCCTACAGTAGTTGAAAATAGGACTTTGGAGAGAGCA 801 |||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 894 CCTTCCCTGTCTCCTCCTCCTCCTCCTAAAGTAGTTGAAAATAGGACTTTGGAGAGAGCT 953 Query 802 GAATCTATGACAAACCCAGTGAAACCTGCAGTTCTACCGGTTGTCCCTGAGAAGCCTGTA 861 ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||| Sbjct 954 GAATCTATGACAAACCCAGTGAAACCTGCAGTTTTACCTGTTGTCCCCGAGAAGCTTGTA 1013 Query 862 GAAAACGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGG-AGACTTAGTGAAGA 920 ||| | ||||||||||||||||||||||||||||||||||||||| | ||| |||||||| Sbjct 1014 GAAGAGGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGGCA-ACTAAGTGAAGA 1072 Query 921 CCTTCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAA 980 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1073 CCTCCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AA 1131 Query 981 -TCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1039 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 CTCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1191 Query 1040 AAACACTTTGGGAGCTTTACAGATTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAA 1099 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1192 AAACACTTTGGGAGCTTTTCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAA 1251 Query 1100 AAGAGGAACATGGATTAGACTCAGAAAGAGATGCTGAATCTTGTCACAATAGTGTGCAAG 1159 | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1252 AGGAGGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACG 1311 Query 1160 AACCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1219 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 AATCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1371 Query 1220 CATCTCCTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1279 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1372 CATCTACTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1431 Query 1280 GTGGCTCAGGCTCGGGTTCTAGTGATTCCGACAGTGATAGCTCAGGGCATGGATCTGATA 1339 |||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| Sbjct 1432 GTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTCAGGACATGAATCTGATA 1491 Query 1340 TCGGTAATTAA 1350 |||||||||| Sbjct 1492 CCGGTAATTAA 1502 > AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing protein | chr1:6125356-6127404 REVERSE LENGTH=1768 Length=1768 Score = 403 bits (218), Expect = 2e-111 Identities = 480/603 (80%), Gaps = 32/603 (5%) Strand=Plus/Plus Query 772 GTAGTTGAAAATAGGACTTTGGAGAGAGCAGAATCTATGACAAACCCAGTGAAACCTGCA 831 ||| ||||||||||||||| |||||||| |||||||||||||| ||| ||| |||||| | Sbjct 996 GTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAA 1055 Query 832 GTTCTACCGGTTGTC-CCTGAG-AAGCCTGTAGAA-A--ACGCGTCTG--CA-AACAGGG 883 | | || || | || ||| ||| ||| |||| | | || ||| | ||||||| Sbjct 1056 GCTGTAATTACTG-CTCCAGAGAAAG-CTGAAGAAGAGGAAGCACCTGTTAACAACAGGG 1113 Query 884 ACTTGACGTTTGATGAGAAGCGGAGACTTAGTGAAGACCTTCAGGATTTACCTTATGACA 943 || | || || || ||||| |||||||| |||||||| ||||| || || |||||||||| Sbjct 1114 ACCTCACCTTGGAAGAGAAACGGAGACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACA 1173 Query 944 AGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAATCCAGAACTCTCTCAACAAGATG 1003 | |||||| | ||||| ||||| ||||||||||| |||||||| ||||||||| |||||| Sbjct 1174 AACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATG 1233 Query 1004 ATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACACTTTGGGAGCTTTACAGA 1062 ||||||||||| | |||||||||||||||||| | || || |||||||||||||| ||| Sbjct 1234 ATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACGCTTTGGGAGCTTTATAGA 1292 Query 1063 TTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAAAAGAGGAACATGGATTAGACTCA 1122 || ||||||| ||||||||||||| |||||||||||| |||| |||||||| | ||| Sbjct 1293 TTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCA 1352 Query 1123 GAAAGAGATGCTGAATCTTG-TCACAATAGTGTGCAAGAACCGAACACGCTAGTAACTGG 1181 ||||||||||||||||| || |||||||||| | |||||||| | ||| |||||| ||| Sbjct 1353 GAAAGAGATGCTGAATC-TGTTCACAATAGTATTCAAGAACCTACCACTTTAGTAAGTGG 1411 Query 1182 C-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T-G--TGGCATCTCCTGTTC 1231 | | || | || | ||||||||||| ||| | | | | ||||||||| || Sbjct 1412 CACCACAA-CATCGAGAGTTACTGAATCAGGAAAAGCAATTCGCACATCATCTCCTGCTC 1470 Query 1232 GACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTAGTGGCTCAGGC 1290 | |||||| | |||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 1471 GGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAGTTCTAGTAGTGACTCAGGA 1529 Query 1291 TCGGGTTCTAGTGATTCCGACAGTGATAGCTC---AGGGCATGGATCTGATA-TCGGTAA 1346 || | ||||||||| | |||||||| ||||| ||| | |||||| |||| | ||||| Sbjct 1530 TCTTGCTCTAGTGATACTGACAGTGACAGCTCTTCAGGACGTGGATCAGATAAT-GGTAA 1588 Query 1347 TTA 1349 ||| Sbjct 1589 TTA 1591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66465521580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5