BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316265
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73150.1 | Symbols: GTE3 | global transcription factor group... 1940 0.0
AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing pr... 403 2e-111
> AT1G73150.1 | Symbols: GTE3 | global transcription factor group
E3 | chr1:27504112-27506112 REVERSE LENGTH=1717
Length=1717
Score = 1940 bits (1050), Expect = 0.0
Identities = 1285/1391 (92%), Gaps = 46/1391 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCTGGTCATATAGCCGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGACTGAT 60
||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 117 ATGGCGTCTGGTCCTATAGCTGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGAGTGAT 176
Query 61 AGTGGCAACAAAAGCCAAAAACGA-CCGAAGCCCACGATGGCGAAGTCGAATTCGCTTGG 119
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 177 AGTGGCAACAAAAGCCAAAAACGATCC-AAGCCCACGGTGGCGAATTCGAATTCGCTTGG 235
Query 120 GTCGGAAGATAATCATCAGATGATGAAGATAAGTTTGAGCTCAATTTCGAAGCTTGAAGT 179
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 236 GTTGGAAGATAATCATCAGATGATGAAGATAAGTTTAAGCTCAATTTCCAAGCTTGAAGT 295
Query 180 TAGAAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAGCG 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 TAGGAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAACG 355
Query 240 ACTCGAA-C-C------ACAA----GCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 287
|||||| | | |||| |||||||||||||||||||||||||||||||||||
Sbjct 356 GCTCGAACCACAAGGTAACAACTTCGCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 415
Query 288 CGGTGGTAAG-AAGAGTGGAGTACATGGAGCTG--G-TGATAAAGGTACTGTTCAGATCT 343
|||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 416 CGGTGGTAAGAAAG-GTGGAGTACATGGAGCTGCTGCTGATAAAGGTACTGTTCAGATTT 474
Query 344 TGAAGAGCTGCAACAATTTGCTTACGAAATTAATGAAGCATAAGTCTGGATGGGTTTTCA 403
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 475 TGAAGAGCTGCAACAATTTGCTTACCAAGTTAATGAAGCATAAGTCTGGATGGATTTTCA 534
Query 404 ATACTCCAGTTGATGCAGTTATGCTTGGTTTACATGATTATCACAATATTGTTGAGAAGC 463
||||||||||||||| ||||| |||||||||||||||||||||||||||| || || |||
Sbjct 535 ATACTCCAGTTGATGTAGTTACGCTTGGTTTACATGATTATCACAATATTATTAAGGAGC 594
Query 464 CTATGGATCTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTGGTATAAGTCACCATTGG 523
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 595 CTATGGATTTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTTGTATAAGTCACCTTTGG 654
Query 524 AGTTTGCTGAGGATGTGAGACTTACTTTTAACAATGCAATGCTGTATAATCCCGTGGGGC 583
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 655 AGTTTGCTGAGGATGTCAGACTTACTTTTAACAATGCAATGCTGTATAATCCTGTGGGGC 714
Query 584 ATGATGTGCATCATATGGCTGAGTTTTTGTTGAATCTGTTTGAAGAGAAATGGGCGCCTC 643
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 715 ATGATGTGTATCATATGGCTGAGATTTTGTTGAATCTGTTTGAAGAGAAATGGGTGCCTC 774
Query 644 TTGAAACGCAGTATGGA-TTACTTAATAGGAAGCAACAACCAGTCCGTGATATCGATCTC 702
|||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 775 TTGAAACGCAGTAT-GAGTTACTTATTAGGAAGCAACAACCAGTCCGTGATATCGATTTC 833
Query 703 CATGCTCCTGTTTCAACAAACACTCATAACATAGA---G---CCATT-TCCG-T--T--A 750
|||||||||||||| |||||||||||||| |||| | || || ||| | | |
Sbjct 834 CATGCTCCTGTTTCGACAAACACTCATAATGTAGAGGCGTTACCGTTACCCGCTCCTACA 893
Query 751 -----CCTG----CTCCTCCTCCTCCTACAGTAGTTGAAAATAGGACTTTGGAGAGAGCA 801
|||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 894 CCTTCCCTGTCTCCTCCTCCTCCTCCTAAAGTAGTTGAAAATAGGACTTTGGAGAGAGCT 953
Query 802 GAATCTATGACAAACCCAGTGAAACCTGCAGTTCTACCGGTTGTCCCTGAGAAGCCTGTA 861
||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||
Sbjct 954 GAATCTATGACAAACCCAGTGAAACCTGCAGTTTTACCTGTTGTCCCCGAGAAGCTTGTA 1013
Query 862 GAAAACGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGG-AGACTTAGTGAAGA 920
||| | ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1014 GAAGAGGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGGCA-ACTAAGTGAAGA 1072
Query 921 CCTTCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAA 980
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1073 CCTCCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AA 1131
Query 981 -TCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1191
Query 1040 AAACACTTTGGGAGCTTTACAGATTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAA 1099
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 AAACACTTTGGGAGCTTTTCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAA 1251
Query 1100 AAGAGGAACATGGATTAGACTCAGAAAGAGATGCTGAATCTTGTCACAATAGTGTGCAAG 1159
| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1252 AGGAGGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACG 1311
Query 1160 AACCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1219
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AATCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1371
Query 1220 CATCTCCTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1279
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CATCTACTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1431
Query 1280 GTGGCTCAGGCTCGGGTTCTAGTGATTCCGACAGTGATAGCTCAGGGCATGGATCTGATA 1339
|||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||
Sbjct 1432 GTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTCAGGACATGAATCTGATA 1491
Query 1340 TCGGTAATTAA 1350
||||||||||
Sbjct 1492 CCGGTAATTAA 1502
> AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:6125356-6127404 REVERSE LENGTH=1768
Length=1768
Score = 403 bits (218), Expect = 2e-111
Identities = 480/603 (80%), Gaps = 32/603 (5%)
Strand=Plus/Plus
Query 772 GTAGTTGAAAATAGGACTTTGGAGAGAGCAGAATCTATGACAAACCCAGTGAAACCTGCA 831
||| ||||||||||||||| |||||||| |||||||||||||| ||| ||| |||||| |
Sbjct 996 GTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAA 1055
Query 832 GTTCTACCGGTTGTC-CCTGAG-AAGCCTGTAGAA-A--ACGCGTCTG--CA-AACAGGG 883
| | || || | || ||| ||| ||| |||| | | || ||| | |||||||
Sbjct 1056 GCTGTAATTACTG-CTCCAGAGAAAG-CTGAAGAAGAGGAAGCACCTGTTAACAACAGGG 1113
Query 884 ACTTGACGTTTGATGAGAAGCGGAGACTTAGTGAAGACCTTCAGGATTTACCTTATGACA 943
|| | || || || ||||| |||||||| |||||||| ||||| || || ||||||||||
Sbjct 1114 ACCTCACCTTGGAAGAGAAACGGAGACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACA 1173
Query 944 AGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAATCCAGAACTCTCTCAACAAGATG 1003
| |||||| | ||||| ||||| ||||||||||| |||||||| ||||||||| ||||||
Sbjct 1174 AACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATG 1233
Query 1004 ATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACACTTTGGGAGCTTTACAGA 1062
||||||||||| | |||||||||||||||||| | || || |||||||||||||| |||
Sbjct 1234 ATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACGCTTTGGGAGCTTTATAGA 1292
Query 1063 TTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAAAAGAGGAACATGGATTAGACTCA 1122
|| ||||||| ||||||||||||| |||||||||||| |||| |||||||| | |||
Sbjct 1293 TTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCA 1352
Query 1123 GAAAGAGATGCTGAATCTTG-TCACAATAGTGTGCAAGAACCGAACACGCTAGTAACTGG 1181
||||||||||||||||| || |||||||||| | |||||||| | ||| |||||| |||
Sbjct 1353 GAAAGAGATGCTGAATC-TGTTCACAATAGTATTCAAGAACCTACCACTTTAGTAAGTGG 1411
Query 1182 C-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T-G--TGGCATCTCCTGTTC 1231
| | || | || | ||||||||||| ||| | | | | ||||||||| ||
Sbjct 1412 CACCACAA-CATCGAGAGTTACTGAATCAGGAAAAGCAATTCGCACATCATCTCCTGCTC 1470
Query 1232 GACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTAGTGGCTCAGGC 1290
| |||||| | |||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1471 GGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAGTTCTAGTAGTGACTCAGGA 1529
Query 1291 TCGGGTTCTAGTGATTCCGACAGTGATAGCTC---AGGGCATGGATCTGATA-TCGGTAA 1346
|| | ||||||||| | |||||||| ||||| ||| | |||||| |||| | |||||
Sbjct 1530 TCTTGCTCTAGTGATACTGACAGTGACAGCTCTTCAGGACGTGGATCAGATAAT-GGTAA 1588
Query 1347 TTA 1349
|||
Sbjct 1589 TTA 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5