BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316268
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73170.1 | Symbols: | P-loop containing nucleoside triphosp... 3110 0.0
> AT1G73170.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:27511661-27514797
REVERSE LENGTH=2076
Length=2076
Score = 3110 bits (1684), Expect = 0.0
Identities = 1906/2009 (95%), Gaps = 31/2009 (2%)
Strand=Plus/Plus
Query 1 ATGCTGAGCTTATCACTGAGTAATCATGTTCCTCCATTAACGCTCTTGCGTCATGAACGA 60
||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 15 ATGCTGAGCTTATCATTGAGTAATCATGTTCCTCCATTAACGCTCTTGAGCCATGAACGA 74
Query 61 AGCTTGAGCTTCCTCAAGCTCCGATGTCGATCGTCTCTTCTCTTTCACCACCTCTTCCAC 120
| || |||||||||||| | ||||||||||| ||||||||||||| |||||||||
Sbjct 75 A----GA--ATCCTCAAGCTCCAAAGTCGATCGTCTATTCTCTTTCACCAACTCTTCCAC 128
Query 121 ACTAAATTCC-T-T-C--TCG-----TT--TC---GTCTTCTTCACCTGGAGTTGTTGCT 165
||||| |||| | | | ||| || || ||||||||||| |||||||||||||
Sbjct 129 ACTAAGTTCCTTCTCCTGTCGAATTCTTCCTCTTTGTCTTCTTCACATGGAGTTGTTGCT 188
Query 166 ATTTCGGCATCT---TCGTC--TC-CAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 219
|||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 189 ATTTCGGCATCTCCGTCTTCAGTCGCAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 248
Query 220 GACGAATTACGCCGTCTGTTGGCACTGGTACCGGAGGAGATACGCCGGACACTAG-AGAA 278
||||||||||| ||||| ||||| || ||||||||||||||||||| |||||| | || |
Sbjct 249 GACGAATTACGTCGTCTATTGGCGCTCGTACCGGAGGAGATACGCCAGACACT-GAAGGA 307
Query 279 GCACCCTGAAATTAGTGAACTCATAGAGGTAGTGTTGGATTTAGGTCGTAAACCTCTGGC 338
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 308 GCACCCTGAAATTAGTGAACTCATAGAGATAGTGTTGGATTTAGGTCGTAAACCTCTGGC 367
Query 339 GCGATTCCCTTCTGGTGATTTTGTTATCTCCGACGAAGCTGTTAGAGTTAAAGATCTGGA 398
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 368 GCGATTCCCTTCAGGTGACTTTGTTATCTCCGACGATGCTGTTAGAGTTAAAGATCTGGA 427
Query 399 ATTCGCTGTTTCTCAGGTCGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 458
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATTCGCTGTTTCTCAGGTTGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 487
Query 459 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAGGGAGAAATTATTGGATTAACTTGCCG 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 488 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAAGGAGAAATTATTGGATTAACTTGCCG 547
Query 519 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 607
Query 579 CTCATTGTTGCTTATTGGTCCACCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 638
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTCATTGTTGCTTATTGGTCCTCCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 667
Query 639 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 727
Query 699 TGGTGGGGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 758
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TGGTGGTGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 787
Query 759 TAACTCTGACATACAACACAAGGTGCTGATAGAGGCAGTAGAAAACCATATGCCCCAAGT 818
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 788 TAACTCTGACATACAACACAAGGTGCTGATTGAGGCAGTAGAAAACCATATGCCCCAAGT 847
Query 819 GATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACAATAGCAGA 878
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 848 AATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACTATAGCAGA 907
Query 879 ACGTGGAATCCAGTTAGTTGCCACTGCTCATGGAGCCACCATCGAGAATTTGATTAAGAA 938
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 908 ACGTGGAATCCAGTTAGTCGCCACTGCTCATGGAGCCACTATCGAGAATTTGATTAAGAA 967
Query 939 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTGACTCTTGGAGATGAGGAAGC 998
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 968 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTAACTCTTGGAGATGAGGAAGC 1027
Query 999 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTCCAACATTTAACTG 1058
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1028 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTTCAACATTTAACTG 1087
Query 1059 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATTGTAGTCTTGAAGCAACTGT 1118
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1088 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATCGTAGTCTTGAAGCAACTGT 1147
Query 1119 TGATGCTGTTCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1178
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TGATGCTATCCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1207
Query 1179 AGTGGAAGTGATTATGGAAAAGGAACCTTTCATCGACGAGACGACTGTGGATAAGAAACA 1238
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1208 AGTGGAAGTGATTATGGAGAAGGAACCTTTCATCGACGAGAAGACTGTGGATAAGAAACA 1267
Query 1239 TGAAGAGGAAACATTAGATGTTTCGAAGCTCGCCAAGGAGGAAACTATCTCTGAAGTTCT 1298
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1268 TGAAGAGGAAACATTAGATGTTTCGAAGCTCACCAAGGAGGAAACTGTCTCTGAAGTCCT 1327
Query 1299 TCCAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGCAAGAGACATTGATGTATCTATA 1358
|| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1328 TCAAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGAAAGATACATTGATGTATCTATA 1387
Query 1359 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATAAAACAACTGGAGATGGAAAC 1418
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1388 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATCAAACAACTAGAGATGGAAAC 1447
Query 1419 TGCAGTAGAGTTAACTGACGACATTAGCGAAGCAGAAGCCTTACTTGCATTGCAAGCGAA 1478
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 1448 TGCGGTAGAGTTAACTGACGACATTAGTGAAGCAGAAGCCTTACTCGCGTTGCAAGCAAA 1507
Query 1479 GATCAGGAAGAATCCCCGGATTAAATCATTAGCTACATCTCACGGTATACCTGTTTATGT 1538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1508 GATCAGGAAGAATCCCCGGATTAAATCATTTGCTACATCTCACGGTATACCTGTTTATGT 1567
Query 1539 AACAAAGACTAACTCAGGTATTCAAGTGGCCAAGGCGATACGGGCATTGCTAACCGATTA 1598
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1568 AACAAAGACTAACTCAGGTATCCAAGTGGCCAAGGCGATACGGGCATTACTAACAGATTA 1627
Query 1599 CGAAGACAGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CGAAGACGGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1687
Query 1659 CGCCTTAGAGGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAAGAAACAGC 1718
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1688 CGCCTTAGAAGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAGGAAACAAC 1747
Query 1719 CGATTTACTCCCGAGGCCACCTAGGATTGTATCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1778
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1748 CGATTTACTCCCGAGGCCACCTAGGATTGTGTCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1807
Query 1779 CAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTAAGGATCCTCCCTTA 1838
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1808 TAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTACGGATTCTCCCTTA 1867
Query 1839 TGGGACGGAAGAAGACAGAGACGATGGTGAAGATGAAGGAGAGTTTGAAGAAGAGAACGG 1898
| | ||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1868 TAGCACGGAAGAAGATAGAGACGACCGTGAAGATGAAGGAGAGTTTGGAGAAGCGAACGG 1927
Query 1899 GGAAGAGCTTGACGAGTTCGGTTGT-GCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1957
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1928 GGAAGAGCTTGACGAGTTAGGTT-TCGCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1986
Query 1958 TCGATAGGTTACCCCTATTGCCTGACTAG 1986
||||||||||||| ||||||||||| |||
Sbjct 1987 TCGATAGGTTACCTCTATTGCCTGATTAG 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5