BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316296

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73550.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   590    5e-168


> AT1G73550.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:27647756-27648536 
REVERSE LENGTH=509
Length=509

 Score =  590 bits (319),  Expect = 5e-168
 Identities = 401/441 (91%), Gaps = 4/441 (1%)
 Strand=Plus/Plus

Query  1    ATGAATATCACAAGAATTTTCGGTGTAGTCACCATCGTCGTCATTCTCTACTCCGTGCAA  60
            |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct  1    ATGAATATCACAAGAATTCTCGGTGTAGTCACCACCGTCGTCATTCTCTACTCCGTGCAA  60

Query  61   GTTACAGCACAATTATTCGGAGATGTTCAACAGGCAATGCGATGTGTATCAAAACTGTTG  120
            || ||||||||||| |||||||| ||||||||||||||| |||| ||| |||||||  ||
Sbjct  61   GTCACAGCACAATTTTTCGGAGACGTTCAACAGGCAATGAGATGCGTAGCAAAACTAATG  120

Query  121  CCATGTCAACCGTACATTCACTTGTCGATTCCTCCGCCGCCGTGGTGTTGCAATCCGATG  180
            ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct  121  CCATGTCAACCGTACATTCACTTGTCGATTCCTCCGCCGCCATTGTGTTGTAATCCGATG  180

Query  181  AAACAGATCGCTGAGCAAG-ATGTGTCGTGTCTATGCACCGCCTTCAAACATCCAGACTT  239
            ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAACAGATCGCCGAG-AAGGATGTGTCGTGTCTATGCACCGCCTTCAAACATCCAGACTT  239

Query  240  GCTTAGGTTCCTTGCTCTCACCAAAGAGAACGCTCTTAATCTCCTTAACTCATGTGGTAT  299
            ||| |||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||
Sbjct  240  GCTCAGGTTCCTTGCTCTCACCAAAGAGAACGCTATTAAAATCCTCGACTCATGTGGTAT  299

Query  300  TAATCATGATTTGTCACAGTGCAACAAGATTAATCCTTCTTCGCCTGCTGCGTTGCCTGA  359
            ||||||||||  ||||   |||||||||| ||||||||||||||||||||||||||||||
Sbjct  300  TAATCATGATCCGTCAGTCTGCAACAAGACTAATCCTTCTTCGCCTGCTGCGTTGCCTGA  359

Query  360  AGCTGCGACCAGCGGGAATTCTGGCAGCACCAAGAAAAATGCAGCTCTATCCATCAGTTT  419
            ||||||||| || |||||||||  |||||||||||||||  |||||||| |||||| |||
Sbjct  360  AGCTGCGACTAGTGGGAATTCTTTCAGCACCAAGAAAAACACAGCTCTAGCCATCACTTT  419

Query  420  TTTGGGATTTAGCTTT-GTAT  439
            ||| ||||||  |||| ||||
Sbjct  420  TTTCGGATTTT-CTTTTGTAT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5