BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316299

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73580.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB...   798    0.0  


> AT1G73580.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB 
domain) family protein | chr1:27654841-27655518 FORWARD LENGTH=507
Length=507

 Score =  798 bits (432),  Expect = 0.0
 Identities = 483/508 (95%), Gaps = 2/508 (0%)
 Strand=Plus/Plus

Query  1    ATGTCCCTGT-TGGATAATCTGTTAGGTATCCTCCGCGTTCGCGTCAAACGTGGTGTCAA  59
            ||||| || | ||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct  1    ATGTCGCT-TATGGATAATCTGTTAGGTATCCTCCGCGTTCGTGTCCAACGCGGTGTCAA  59

Query  60   CCTCGCCGTACGTGATGTTTCTAGCAGCGATCCTTACGTCGTCCTCAAGCTAGGTCGCCA  119
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  60   CCTCGCCGTACGTGATGTTTCCAGCAGCGATCCTTACGTCGTCCTCAAGCTAGGTCGTCA  119

Query  120  GAAACTCAAAACCAAAGTGGTGAAGAAAAACGTAAACCCACAATGGGAAGAAGATTTGTC  179
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  120  GAAACTCAAAACCAAAGTGGTGAAGCAAAACGTAAACCCACAATGGCAAGAAGATTTGTC  179

Query  180  ATTCACAGTCTCTGACCCGAATCTCCCGCTTACTCTGATTGTGTACGATCACGACTTCTT  239
            |||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  180  ATTCACAGTAACCGACCCTAATCTCCCGCTTACTCTGATTGTGTACGATCACGACTTCTT  239

Query  240  CAGCAAAGATGACAAAATGGGAGACGCAGAGATCGATTTGAAACCGTACATTGAAGCCTT  299
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  240  CAGCAAAGACGACAAAATGGGAGACGCAGAGATCGATTTGAAACCGTACATCGAAGCCTT  299

Query  300  GCGAATGGAGCTCTCCGGTTTACCAGACGGAACCATCATATCGACGATCGGTCCGAGCCG  359
             |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  300  ACGAATGGAACTCTCCGGTTTACCAGACGGAACCATCATATCGACCATCGGTCCAAGCCG  359

Query  360  CGGCAACTGCTTAGCCGAAGAAAGCTACATCCGTTGGATCAACGATCGAATCGTTCAGAA  419
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct  360  TGGCAACTGCTTAGCCGAGGAAAGCTACATCCGTTGGATCAACGATCGAATCGTTCAGCA  419

Query  420  CATTTGTCTCCGACTCCGTAACGTCGAGCGTGGTGAAGTCGAGATTGAGCTCCAATGGAT  479
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  420  CATTTGTCTCCGACTCCGTAACGTCGAGCGTGGTGAAGTTGAGATTGAACTCCAATGGAT  479

Query  480  TGATCTTCCCGGTTCTAAAGGCTTGTAA  507
            ||||||||||||||||||||||||||||
Sbjct  480  TGATCTTCCCGGTTCTAAAGGCTTGTAA  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5