BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316317
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73740.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2002 0.0
> AT1G73740.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:27734279-27736189 FORWARD LENGTH=1649
Length=1649
Score = 2002 bits (1084), Expect = 0.0
Identities = 1236/1309 (94%), Gaps = 12/1309 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCCCTTCCTTCCTCTCTCCAAATTTACCCTTTTGCCCTTCGACCAAACTTATT 60
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct 173 ATGGCGATCCCTTCCTTCCTCTCTCCAAATTTACACTTTTACCCTTCTACCAAACTCGTT 232
Query 61 CCGAGTCGACTCACCCTTtcctcctcctcctcctccATTTGTTGTATCTCAGTAGACCGC 120
|||||||||||||| |||||||| ||||||| | | |||||||| | ||||||||||||
Sbjct 233 CCGAGTCGACTCACTCTTTCCTCATCCTCCT--T-CGTTTGTTGTTTATCAGTAGACCGC 289
Query 121 CAAATTAACCATTCCTCCGTCTCCGACGAAATCTCCGGCTTACGAGTAGTCATATCCGCC 180
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct 290 CAAATTAACCATTCCTCCGTCTCCAACGAAACCTCCGGCTTACGAGTTGTCATATCCGCC 349
Query 181 GGGGGCACCGCCGGACACATCTCTTCGGCGC-TAGCGATCGGAGACGAGCTGAAATCAGC 239
|| ||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||
Sbjct 350 GGAGGCACCGCCGGACACATCTCTTCAGC-CTTAGCGATCGGAGACGAGCTAAAATCAGC 408
Query 240 CGACCCACTTGCTCGGATCCTCTTCATCGGATTCCCAAACAGTATGGAGAGCACGACGGT 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CGACCCACTTGCTCGAATCCTCTTCATCGGATTCCCAAACAGTATGGAGAGCACGACGGT 468
Query 300 TCCCTCCGCCGGTTTCGAGTTCTCAGCAATCTCCACCGTCGGATCATCATCGTCCCGACC 359
||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 469 TCCATCCGCCGGATTCGATTTCTCAACAATCTCCACCGTCGGATCATCATCGTCCCGACC 528
Query 360 ATTCCTCTGTTTCACCTCTTTCCTCAAATTCCCTCTCCGCTTGATCCAATCCACCTTCGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATTCCTCTGTTTCACCTCTTTCCTCAAATTCCCTCTCCGCTTGATCCAATCCACCTTCGA 588
Query 420 ATCCTACAAAATCCTCCGTGAATTCAAACCTCAAATCGTCGTCGGAACCGGAGGACACGC 479
|||||||||||||||||| ||| | ||||| ||||||||| |||| ||||||||||||||
Sbjct 589 ATCCTACAAAATCCTCCGCGAACTAAAACCACAAATCGTCATCGGCACCGGAGGACACGC 648
Query 480 CTCTTTCCCGGTATGTTTCGCCGCCGTGATCTCAAGAACCAAATTCGTAATCCAAGAACA 539
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 CTCTTTTCCGGTCTGTTTCGCCGCCGTGATCTCAAGAACTAAATTCGTAATCCAAGAACA 708
Query 540 AGATTCAATCCCTGGAACCACCAATTGGATTCTCTCTTTCTTCGCCGACACAATCTTCGC 599
||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 709 AGATTCAATCCCTGGAACCACTAACTGGATTCTGTCTTTCTTCGCCGATACAATCTTCGC 768
Query 600 TCCTTTCAATTGTACAGTCACTAACCTCCCCAAACGAGTCGCCG-GAAAGTGTGTCGTCT 658
||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 769 TCCTTTCAACTGTACAGTCACTAACCTCCCCAAACGAGTCGCCGCG-AAGTGTGTCGTCT 827
Query 659 ACGGGAACCCGATAAGACAAGCGCTTAGACGGTACTCGTCGAAAGGAGCGGCGCGTGTGA 718
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 828 ACGGGAACCCGATAAGACAAACGCTTAGACGATACTCGTCGAAAGGAGCGGCGCGTGTGA 887
Query 719 GCTTCTTCGGACAGTGGGCTGGGGCTGTGTCGGAAGCGAAAGTTGTGCTTTTGCTTGGTG 778
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 888 GCTTCTTCGGACAGTGGGCTGGAGCTGTGTCGGAACCGAAAGTTGTGCTTTTGCTTGGTG 947
Query 779 GGTCATTAGGAGCCAATGCCATTAACATAGCTTTGCTTAACTGTTACTCGCAGTTGTTGT 838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGTCTTTAGGAGCCAATGCCATTAACATAGCTTTGCTTAACTGTTACTCGCAGTTGTTGT 1007
Query 839 CTGAACATGAGAACTGGTTCTTTGTTTGGCAAACTGGTGTTGAAGCTTTTGATGAAATGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CTGAACATGAGAACTGGTTCTTTGTTTGGCAAACTGGTGTTGAAGCTTTTGATGAAATGG 1067
Query 899 ATAGTCTTGTTAGAAGCCATCCTCGTCTCTTTCTATCTCCATTCTTGCGATCAATCGGTG 958
|||||||||||||||| ||||||||||||||||||||||| || ||| | || || ||||
Sbjct 1068 ATAGTCTTGTTAGAAGTCATCCTCGTCTCTTTCTATCTCCGTTTTTGAGGTCGATAGGTG 1127
Query 959 TGGCTTACGCGGCTGCAGATTTGGTTATATCGAGAGCGGGTGCAATGACTTGCTCAGAGA 1018
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1128 TGGCGTATGCGGCTGCAGATTTGGTTATCTCGAGAGCTGGTGCAATGACTTGCTCAGAGA 1187
Query 1019 TTATGGCTTTAGGCAAACCTTCTATTCTGATACCATCACCACATAGCGATGAAGGGGATC 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1188 TTATGGCTTTAGGCAAACCTTCTATTCTGATACCATCACCGCATAGCGATGAAGGGGATC 1247
Query 1079 AAGTAAGGAATGCTTGTTTAATGGCAGACATTGTTGGATCAAAGTTAATAACAGAAGAGG 1138
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1248 AAGTAAGGAATGCTTCTTTAATGGCGGACATTGTTGGATCAAAGTTAATAACAGAAGAGG 1307
Query 1139 AGCTAGATACGATAACTCTTCGAGCTGCCATGGAAGATATTCTAGGGAATGAAGAACTGA 1198
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AGCTAGATACGATCACTCTTAGAGCTGCCATGGAAGATATTCTAGGGAATGAAGAACTGA 1367
Query 1199 TGGCGGAAATGAGCGAGCGGGCGTTCAAAGCTGCGAAACCTGACGCTGCATCAGATGTTG 1258
|| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1368 TGATGGAAATGAGCGAGCGGGCATTCAAAGCTGCGAAAGCGGACGCTGCATCAGATGTTG 1427
Query 1259 CTAAACACATTATTTCTATTATCAAATCAAATACAAAGATAAGTAGGTA 1307
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1428 CTAAACACATTATTTCTATTATCAAATC-----CAAAGATAAGTAGGTA 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5