BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316331
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73875.1 | Symbols: | DNAse I-like superfamily protein | ch... 1991 0.0
> AT1G73875.1 | Symbols: | DNAse I-like superfamily protein |
chr1:27781006-27784920 FORWARD LENGTH=1820
Length=1820
Score = 1991 bits (1078), Expect = 0.0
Identities = 1279/1371 (93%), Gaps = 33/1371 (2%)
Strand=Plus/Plus
Query 1 ATGAGCGGATACGAGCGGAAGAACACGACGGGGAACTCAATCACCATCACCAAGCGGAAG 60
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 107 ATGAGCGGATACGAGCGTAAGAACACGACGGCGAACTCAATCACCATCACCAAGCGGAAG 166
Query 61 CGAT-GCTCGATTTCGGAACCATCGGAGAACGTATACGAGAAATCGAATAGGCAGGAGTC 119
|| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 167 CG-TAACTCGATTTCGGAACAATCGGAGAACGTATACGAGAAATCGAATAGGAAGGAGTC 225
Query 120 AATAACCCTAAAACCTCACCGTTCTTTTGCGCCGGGATCCAGCCAACGTAATTGTAAACC 179
||||||| |||||||||||||||||||| ||||||||| |||||| ||| ||||||||||
Sbjct 226 AATAACCTTAAAACCTCACCGTTCTTTTACGCCGGGATTCAGCCAGCGTGATTGTAAACC 285
Query 180 --T--G-C-------GTCTTCTCTTCGGCGGCGACGGAGAGCAAAGGAGAAGATCTCGAG 227
| | | ||||||||| || |||||||||||| | |||||||||||||||||
Sbjct 286 TGTCAGACATAGTAAGTCTTCTCTCCGCCGGCGACGGAGAACTAAGGAGAAGATCTCGAG 345
Query 228 TTCCGTTGAGCGCGAATGGGTGTTTTCCGCAAGCAATTTTGAAAATCTTA-AAGATAAAT 286
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 346 TTCCGTTGAGCGCGAATGGGTGTTTTCCGCAAACAATTTTGAAAATC-TAGCAGATAAAT 404
Query 287 TAGTTTTAGTTTCGTACAATCTACTTGGGGTTGACAATGCGTCTAACCACATGGACTTGT 346
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 405 TAGTATTAGTTTCGTACAATCTACTTGGTGTTGACAATGCGTCGAACCACATGGACTTGT 464
Query 347 ATTACAATGTTCCGCCGAAGCATTTAGAGTGGAGTAGACGGAAACATCTCATATGCAAGG 406
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 465 ATTACAATGTTCCGCGGAAGCACTTAGAGTGGAGTAGACGGAAACATCTCATATGCAAGG 524
Query 407 AGATTAGTCGCTATAATGCTAGCATCTTATGTCTTCAGGCAAGTTCCGGGGAGGTTGACC 466
|||||||||| || ||||| ||||||||||||||| | | |||||||||||
Sbjct 525 AGATTAGTCGTTACAATGCAAGCATCTTATGTCTT----C-A-------GGAGGTTGACC 572
Query 467 GCTTTGATGATCTAGATGTTCTTCTTAAAAATAGGGGATTTCAAGGTGTTCACAAGAGTC 526
||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 573 GCTTTGATGATTTAGATGTTCTTCTTAAAAATAGAGGATTTCGAGGTGTTCACAAGAGTC 632
Query 527 GGACTGGAGAAGCGAGTGATGGTTGTGCTAT-TTTCTGGAAAGAGAAACTATTCAAACTT 585
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||
Sbjct 633 GGACTGGAGAAGCGAGTGATGGTTGTGCTATATTT-TGGAAAGAGAATCTATTTGAACTT 691
Query 586 CTAGACCATCAACATATAGAGTTTGATAAATTTGGCATGCGAAACAATGTTGCTCAACTT 645
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 692 CTAGACCATCAACATATAGAGTTTGATAAATTTGGTATGCGAAACAATGTTGCTCAACTT 751
Query 646 TGTGTTTTAGAGATGAAC--TG-CGAGGACCCAAAGTCTAAATTACGTGTGCGATCATCA 702
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 752 TGTGTTTTAGAGATGAACTGTGAGGAGGACCCAAAGTCTAAATTACGGGTGCGATCATCA 811
Query 703 GATCCTCAAAGGCTAGTGGTTGGGAATATACATGTCCTGTTCAATCCTAAGCGTGGGGAT 762
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 GATCCTCGAAGGCTAGTGGTTGGGAATATACATGTCCTATTCAATCCTAAGCGTGGGGAT 871
Query 763 ATTAAGCTTGGCCAGGTAAGACTCTTTCTGGAGAAGGCTTACAAGCTATCACAGGAATGG 822
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 ATCAAGCTTGGCCAGGTAAGACTCTTTCTGGAGAAGGCTTACAAGCTATCACAGGAATGG 931
Query 823 GGAAATATTCCAGTGGCGATTGCAGGTGATCTGAATAGCACTCCACAGAGTGCAATCTAT 882
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GGAAATATTCCTGTGGCGATTGCAGGTGATCTGAATAGCACTCCACAGAGTGCAATCTAT 991
Query 883 GATTTCATAGCTTCAGCTGATTTGGATACACAACTTCACGATCGCAGGCAAATTTCTGGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GATTTCATAGCTTCAGCTGATTTGGATACACAACTTCACGATCGCAGGCAAATTTCTGGC 1051
Query 943 CAGGGTGAAGTGGAACCAAAGGAGAGGTCATTTAGAAACCATTATGCAGTTAGTGCTTCT 1002
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1052 CAGACTGAAGTGGAACCAAAGGAGAGGTCATTCAGAAACCATTATGCATTTAGTGCTTCA 1111
Query 1003 GTATCCATCTCCGGATCACTACCCAATGAATGGAGCCAAGAAGAACTACAGCTTGCAACT 1062
| |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||
Sbjct 1112 GCATCCATCTCCGGATCACTACTCAATGAGTGGAGCCAGGAAGAATTACAGCTTGCAACT 1171
Query 1063 GGTGGTCAAGCAACCACTCATGTCCAACATCAACTGAAGCTTCATAGCGCATATAGTGGA 1122
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1172 GGTGGTCAAGAAACCACTCATGTCCAACATCAACTGAAGCTTAACAGCGCATATAGTGGA 1231
Query 1123 GTTCCTGGTACATATAGAACAAGAGATCAACGCGGTGAACCATTGGCAACAACGTATCAT 1182
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GTTCCTGGTACATATAGAACTAGAGATCAACGCGGTGAACCATTGGCAACAACGTATCAT 1291
Query 1183 TCCAGGTTTCTAGGAACTGTTGATTATATATGGCACACCAAGGAACTCGTTCCTGTGAGG 1242
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1292 TCCAGGTTCCTTGGAACTGTTGATTATATATGGCATACCAAGGAACTCGTTCCTGTGAGG 1351
Query 1243 GTTCTTGAAACCTTGCCAACTGATGTATTGAGAAGAACAGGTGGACTACCTAGTGAGAAA 1302
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GTTCTTGAGACCTTGCCAGCAGATGTATTGAGAAGAACAGGTGGACTACCTAGTGAGAAT 1411
Query 1303 TGGGGAAGCGATCATCTCGCTATCGCATGTGAACTCGGCTTTGTCAATGAC 1353
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TGGGGAAGCGACCATCTCGCTATCGCATGTGAACTCGGCTTTGTCAATGAC 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5