BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316359
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74130.1 | Symbols: | Rhomboid-related intramembrane serine... 859 0.0
AT1G74140.5 | Symbols: | Rhomboid-related intramembrane serine... 850 0.0
> AT1G74130.1 | Symbols: | Rhomboid-related intramembrane serine
protease family protein | chr1:27873611-27876032 FORWARD
LENGTH=1180
Length=1180
Score = 859 bits (465), Expect = 0.0
Identities = 829/996 (83%), Gaps = 59/996 (6%)
Strand=Plus/Plus
Query 1 ATGCATGCGATTTTCTCTCGCAGGGTCGTCGTC-GTTGGCTTTTCTTCGCAGCTCACCAA 59
|||||||||||||||| ||||||||||| |||| ||| ||| ||| ||||||| |||||
Sbjct 77 ATGCATGCGATTTTCTGTCGCAGGGTCGCCGTCGGTT-GCTCTTCCCCGCAGCTAACCAA 135
Query 60 ATTGGTGACGAAACAGCCGAGCCAGAGTCGCCATTTCATGAGCCAtcttcttcttccttc 119
|||||||||||| ||| |||||||||||||||||| | ||||||| ||||||||| |
Sbjct 136 ATTGGTGACGAAGCAGGCGAGCCAGAGTCGCCATTCCCTGAGCCA---TCTTCTTCC-T- 190
Query 120 taccctctcatcttcttcttcagccacccgctttg-t--tcc-t-t-ctctATCGCGTTT 173
| | | ||| || |||| ||||||||| | ||| | | | |||| || |
Sbjct 191 T----T-TGATC-TC-TCTT------CCCGCTTTGTTCCTCCTTATGTTGTATCACGATC 237
Query 174 GGAGAAAGTTCATGGCTTTTTCGCGA-CCACGTTGGGGAACACCAATCTAAAGCTGAAAT 232
|| || ||||||||| || ||||| | | |||||| ||||||||||| ||||||||||
Sbjct 238 GGCGAGAGTTCATGGATTCTTCGC-AGGGAAGTTGGGAAACACCAATCTGAAGCTGAAAT 296
Query 233 TCAGAAATGTTCTGGAATCTAGAGTTGGGTTCTTCAGTTCTCAGCTTCCTAGTAATGGAT 292
|| |||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 297 TCGGAAATGTTATGGAATCTAGAGCTGGGTTCTTCAGTTCTGAGCTTCCTAGTCATGGA- 355
Query 293 TAATCGAGTCTAAG-GGTTTTACTGGGTTTCAAAAGCGTGGATGGAAGTCTTGGATTAAT 351
| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 356 T--TCGAGTCT-GGTGGTTTTACTGGGTTTCAAAAACGTGGATGGAAGTCTTGGATTAAT 412
Query 352 GGAGCTAATGGTGTAGTTTTTGGGTTGATAATAGCTAATGTTGCAGTATTTACAATGTGG 411
||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 413 GGAGCTAATGGTGTAGTTTTTGGATTGGTAATAGCTAATGCTGCTGTATTTACAATGTGG 472
Query 412 CGGGTTT----CAA--ACAG-ATGGTGGATGTTGAA-ACATTTTGTGCTAACAACGAAAA 463
||||||| ||| ||| ||| |||||| |||| | ||||| || || ||| | | |
Sbjct 473 CGGGTTTTAGGCAAGGACAATATG-TGGATGGTGAAGA-ATTTTATGTTATCAAGGTACA 530
Query 464 GTTTTACGAGTGGACGTATACACACGCTGATAACTTCGGGTTTTAGTAATGTTGGAACCA 523
|||||| || ||||||||||||||||||||| ||||||||||| ||| |||||||| |||
Sbjct 531 GTTTTATGACTGGACGTATACACACGCTGATCACTTCGGGTTTCAGTCATGTTGGAGCCA 590
Query 524 ATCAAATCATCTTGAACATGATTGGACTCTACTACTTCGGAACCAGAATTGCAAGAACCT 583
||| ||||||||||| ||||| || || | |||||||||| ||||||||||||||| ||
Sbjct 591 CTCATATCATCTTGAATATGATGGGGCTTTGCTACTTCGGAGCCAGAATTGCAAGAAGCT 650
Query 584 TGGGGCCGCTTTACCTTTTGAAGCTGTACTTTGCTGGAGCACTTGGTAGCTCTGTTTTCT 643
| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 651 TTGGGCCGCGCTACCTTTTGAAGCTCTACTTTGCTGGAGCACTTGGTGGCTCTGTTTTCT 710
Query 644 TCTTGAGTAATCATGCTCTCTTGGCTA---CACTCAAGGGTCAAGGAGTTGTCACC-ATT 699
||||||||| ||||||||||| || || |||||||||| ||| |||||||| || |
Sbjct 711 TCTTGAGTAGTCATGCTCTCTCGGTTATATCACTCAAGGGCCAAAGAGTTGTC-CCTAAG 769
Query 700 GATAAATCAAAACTCCCCTATTCGCA-GCTGGGTGCTGATGGATCTGTGTTTGCCATCGC 758
||| ||| |||| ||||| ||| | | |||||||||| ||||| |||||| |||||| |
Sbjct 770 GATCAATTAAAAGTCCCC-ATTGGGAAGCTGGGTGCTAATGGACCTGTGTATGCCATTAC 828
Query 759 GCTGCTCGATATGTTCCTCTACCCAAAAGTTACTACATACTTTGTTTTGATGCTCCGAGT 818
||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 829 GCTTCTCGATATGCTCCTTTACCCAAAAGTTACTACATACTTTGGGTTGATGCTCCGAGT 888
Query 819 GCCTGTAATGGGGGGAATCT-TATTCTTAGGACTCGAGATGT-TAAAGATTCTAGAGGGG 876
||||||| | | ||||||| || |||||||||| | || | ||||||| |||||||||
Sbjct 889 GCCTGTATTTGCTGGAATCTATAG-CTTAGGACTCAACAT-TATAAAGATGCTAGAGGGG 946
Query 877 AAAAATAACAATATCTCAAGAA-TTTCGGTGCGTCTGATGGGAGGAGTTGTGGTTGCAGC 935
||||| ||||||| || | | ||| || || | ||||||||||||| |||||||
Sbjct 947 AAAAACAACAATACCTTGACTAGTTT-GGA---TCAGTTGGGAGGAGTTGTAGTTGCAGT 1002
Query 936 CATGGCGTGGGCACGGATAAGGAAAGGCCGATTCTG 971
||| ||||||||| ||||||||||||| ||||||||
Sbjct 1003 CATTGCGTGGGCAAGGATAAGGAAAGGTCGATTCTG 1038
> AT1G74140.5 | Symbols: | Rhomboid-related intramembrane serine
protease family protein | chr1:27876905-27879780 FORWARD
LENGTH=1182
Length=1182
Score = 850 bits (460), Expect = 0.0
Identities = 747/880 (85%), Gaps = 42/880 (5%)
Strand=Plus/Plus
Query 108 tcttcttccttctac-cctctcatcttcttcttcagcca-cccgctttgttccttct-c- 163
||||||||||||| | |||||||||| ||||||||| | ||| ||||||||||||| |
Sbjct 134 TCTTCTTCCTTCT-CGCCTCTCATCTCCTTCTTCAG-TACCCCACTTTGTTCCTTCTGCT 191
Query 164 -tATCGCGTTTGGAGAAAGTTCATGGCTTTTTCGCGACCACGTTGGGGAACACCAATCTA 222
||||||| | || |||||||||||| || ||||| | || |||||| |||||||| |||
Sbjct 192 GTATCGCGATCGGCGAAAGTTCATGGGTTCTTCGCTAGCAAGTTGGGAAACACCAACCTA 251
Query 223 AAGCTGAAATTCAGAAATGTTCTGGAATCTAGAGTTGGGTTCTTCAGTTCTCAGCTTCCT 282
||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 252 AAGCTGAAATTTGGAAATGTTATGGAATCTAGAGCTGGGTTCTTCAGTTCTGAGCTTCCT 311
Query 283 AGTAATGGATTAATCGAGTCTAAG-GGTTTTACTGGGTTTCAAAAGCGTGGATGGAAGTC 341
||| ||||| | |||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 312 AGTCATGGA-T--TCGAGTCT-GGTGGTTTTACTGGGTTTCAAAAGCGGGGATGGAAGTC 367
Query 342 TTGGATTAATGGAGCTAATGGTGTAGTTTTTGGGTTGATAATAGCTAATGTTGCAGTATT 401
|||||| |||||||||||||||||||||||||| || |||||||||||| ||| |||||
Sbjct 368 TTGGATCAATGGAGCTAATGGTGTAGTTTTTGGACTGGTAATAGCTAATGCTGCTGTATT 427
Query 402 TACAATGTGGCGGGTTTCAAACAGATGGTGGATGTTGAAACATTTTGTGCTAACAACGAA 461
|||||||||||| |||||| || | ||| | || | ||||| ||||| |
Sbjct 428 TACAATGTGGCGAGTTTCAGAC--A----GGA-GCTG---GA-----TGCTATCAACGTA 472
Query 462 AAGTTTTACGAGTGGACGTATACACACGCTGATAACTTCGGGTTTTAGTAATGTTGGAAC 521
||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||
Sbjct 473 CAGTTTTACGAGTGGATATATACACACGCTGATAACTTCGGGTTTTAGTCATATTGGTAC 532
Query 522 CAATCAAATCATCTTGAACATGATTGGACTCTACTACTTCGGAACCAGAATTGCAAGAAC 581
|| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 533 CAGTCAAATCATCTTGAACATGATTGGAATCTCCTACTTCGGCTCCAGAATTGCAAGAAC 592
Query 582 CTTGGGGCCGCTTTACCTTTTGAAGCTGTACTTTGCTGGAGCACTTGGTAGCTCTGTTTT 641
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 593 CTTGGGACCGCTCTACCTTTTGAAGCTGTACTTTGCTGGAGCACTTGGTGGCTCTGTTTG 652
Query 642 CTTCTTGAGTAATCATGCTCTCTTGGCTACACTCAAGGGTCAAGGAGTTGTCACCATTGA 701
|||| ||||| |||| || ||||||||||||||||||||| |||||||||||| | ||
Sbjct 653 CTTCCTGAGTTATCACGCCCTCTTGGCTACACTCAAGGGTGAAGGAGTTGTCATTAAGGA 712
Query 702 T-A--AATCAAAA-CTCCCCTATT-CGCAGCTG--GG-TGCTGATGGATCTGTGTTTGCC 753
| | |||||| | | |||| ||| |||||||| || ||||||||||||| ||||||||
Sbjct 713 TCATCAATCAACAGC-CCCC-ATTTCGCAGCTGCTGGGTGCTGATGGATCTATGTTTGCC 770
Query 754 ATCGCGCTGCTCGATATGTTCCTCTACCCAAAAGTTACTACATACTTTGTTTTGATGCTC 813
|||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct 771 ATCGCGCTTCTCGATATGTTCATCTACCCAAAAGTTACAACATACTTTGCGTTGATGCTC 830
Query 814 CGAGTGCCTGTAATGGGGGGAATCTTATTCTTAGGACTCGAGATGTTAAAGATTCTAGAG 873
||||||| ||||||| ||||| || ||||||| ||||||| ||||| |||| ||||
Sbjct 831 CGAGTGCATGTAATGTTTCGAATCATAAACTTAGGAGTCGAGATTTTAAATATTCCAGAG 890
Query 874 GGGAAAAATAACAATATCTCAA-GAATTTCGGTGCGTCTGATGGGAGGAGTTGTGGTTGC 932
||| | ||| ||||| || || || ||| | || | |||||||||||||||||||
Sbjct 891 GGGGGACCGAACCATATCGCATCGAGTT-CGG-G--TCAGTTGGGAGGAGTTGTGGTTGC 946
Query 933 AGCCATGGCGTGGGCACGGATAAGGAAAGGCCGATTCTGA 972
|||||||||||||||||||||| |||||| ||||| |||
Sbjct 947 TGCCATGGCGTGGGCACGGATAAAGAAAGGTCGATTTTGA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5