BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316360
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74150.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2311 0.0
AT1G18610.1 | Symbols: | Galactose oxidase/kelch repeat superf... 859 0.0
> AT1G74150.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:27880528-27883626 FORWARD LENGTH=1710
Length=1710
Score = 2311 bits (1251), Expect = 0.0
Identities = 1418/1499 (95%), Gaps = 9/1499 (1%)
Strand=Plus/Plus
Query 1 ATGAGGTGGGAGAGGGTCCGACAAGTGGGTCTCGGTGATTCTTCTTC---CGGGCCCGGG 57
||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 1 ATGAGGTGGGAGAGGGTCCAACAAGTGGGTCTCGGTGATTCTTCTTCTTTCGGCCCCGGA 60
Query 58 AATAGATGGGGACACACTTGTAACGCCATTAAAGGTGGTC-GATTTCTCTACGT-TTTCG 115
|| |||||||||||||||||||||||||||||||| || | ||||||||||||| ||| |
Sbjct 61 AAGAGATGGGGACACACTTGTAACGCCATTAAAGGCGG-CAGATTTCTCTACGTATTT-G 118
Query 116 GTGGTTTTGGCAGAGACAATTGCTTAACAAATCAAGTTCATGTCTTCGACACTCAAACGC 175
|||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 119 GTGGCTTTGGCAGAGACAATTGCTTAACAAATCAAGTTCATGTCTTCGACGCTGAGACGC 178
Query 176 AGTTATGGACTCGACCTGTAATCAATGGTGTACCGCCCTGCCCGAGGGACAGTCACAGCT 235
|| |||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 179 AGATATGGATTCGACCTGAAATCAATGGCGTACCGCCCTGCCCGAGGGACAGTCATAGCT 238
Query 236 GTACAACAGTTGGGGATAACCTTTTTGTGTTTGGTGGTACTGATGGGACCAATTATCTCA 295
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 GTACAACAGTTGGTGATAACCTTTTTGTGTTTGGTGGTACTGATGGGACCAAATATCTCA 298
Query 296 ACGATGTGCACATTCTAGATACTTCTTCACATACTTGGATATGCCCGGATATTAGAGGGG 355
||||||||||||| || ||||||| |||||| ||||||||| | ||||||||||||||||
Sbjct 299 ACGATGTGCACATCCTTGATACTTATTCACACACTTGGATACGTCCGGATATTAGAGGGG 358
Query 356 AAGGACCAGGGGCAAGAGAGGCTCATAGTGCAGCGCTTGTTGACAAACGTCTTTTCATAT 415
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGGACCAAGGGTTAGAGAGGCTCATAGTGCAGCGCTTGTTGACAAACGTCTTTTCATAT 418
Query 416 TTGGCGGCTGTGGGAAATCTTCTGATTCGGATGATGAAGTATTCTATAATGACCTTTACA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGCGGCTGTGGGAAATCTTCTGATTCGGATGATGAAGTATTCTATAATGACCTTTACA 478
Query 476 TACTTAATACAGAAACTTTTATGTGGAAACGTGCTGTAACATCTGGGAAACCGCCCTCTG 535
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TACTTAATACAGAAACTTACATGTGGAAACGTGCTGTAACATCTGGGAAACCGCCCTCTG 538
Query 536 CACGAGATAGCCACACTTGCTCAGCGTGGAAGAACAAAATCATTGTAGTAGGTGGTGAAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACGAGATAGCCACACTTGCTCAGCGTGGAAGAACAAAATCATTGTAGTAGGTGGTGAAG 598
Query 596 ATTTGGATGACTATTATCTCTCTGACGTTCATATCCTTGATACAGATAAATTTGTTTGGA 655
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 ATTTGGATGACTATTATCTCTCTGATGTTCATATCCTTGATACAGATAAATTTGTTTGGA 658
Query 656 AGGAATTGAGAACTTCAGGACAGTTGTTAACACCTCGAGCCGGTCATGTCACTGTTGCAC 715
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 659 AGGAATTGAAAACTTCAGGACAGGTGTTAACACCTCGAGCCGGTCATGTAACTGTTGCAC 718
Query 716 TAGAGAGGAACTTATTTGTATTTGGAGGGTTTACGGATTCTCAGAATCTTTATGATGATC 775
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TTGAGAGGAACTTATTTGTCTTTGGAGGGTTTACGGATTCTCAAAATCTTTATGATGATC 778
Query 776 TATATGTGCTTGATTTGGAAACGGGTGTATGGTCCAAGGTAGTTGCTATGGAAGAAGGGC 835
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 779 TATATGTGCTTGATTTGGAAACGGGTGTATGGTCCAAGGTTGTTGCTATGGTAGAAGGGC 838
Query 836 CATCTCCTAGATTCTCTTCTGCAGCGGTTTGTTTACATCCTTACAAGGCTGGTTCGTTTT 895
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 CATCTGCTAGATTCTCTTCTGCAGCGGTTTGTTTAGATCCTTACAAGGCTGGTTCGTTTT 898
Query 896 TCTTTGTTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACATTTACTACTTACACA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCTTTGTTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACATTTACTACTTACACA 958
Query 956 CAGAAGGTGGATACGATGTCCAGTTTAATCAAAATCCAGGGCGGTTGTCTCTTAGGAAAC 1015
|||||||| |||||||||||| |||| |||||||||||||| | | |||||| |||||||
Sbjct 959 CAGAAGGTAGATACGATGTCCGGTTTCATCAAAATCCAGGGAGATCGTCTCTAAGGAAAC 1018
Query 1016 AAATGAAGCTAAAATGCCATGGGCAGGATTTAGCTGTGGCCAGAACCAACATTGACCATG 1075
||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||
Sbjct 1019 AAATGAAGCTAAAATGCCAAGGGCAGGAATTAACTGTGGCCAAAACCAACATTGACCATG 1078
Query 1076 GAGGAGAGAATGTCCCTTTGAACATTGGCTCGATTGATCAAAGAAAACCGATGTTTCAAG 1135
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 GAAGAGAGAATGTCCCTTTGAACATTGGCTATATTGATCAAAGAAAACCGATGTTTCAAG 1138
Query 1136 CCAGGGTTACTGAAAACGTCCCTTTAGGTTACACTATAGAAACGATCATTGATGGAAAGG 1195
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCAGGGTTACTGAAAACGCCCCTCTAGGTTACACTATAGAAACGATCATTGATGGAAAGG 1198
Query 1196 TTCTTCGCGGTGTTTTGTTTTCAAACAGACACAGCTCTGTTCAAACCGCAGATTCAAGCT 1255
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 1199 TTCTTCGCGGTGTTTTGTTTTCAAACAGACACAGCTCTGTGCGAATTGCAGATTCAAGCA 1258
Query 1256 TTAGTAATAGGCAAGTGAAAAGGCCTGCTACATCAGATGGAGATTGTGATCATAGAGCAA 1315
|||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 TTAGTAGTAGGCAAGTGGAAAGGCCTGCTACGTCAGATGGAGATTGTGATCATAGAGCAA 1318
Query 1316 AGATGCCAAGAACTTTGAGCAAGGATCCAGCTGGTAGTAGCCAACAAGCTGGTCCTATTG 1375
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 AGATACCAAGAACTTTTAGCAAGGATCCAGCTGGTAGTAGCCAACAAGCTGGTCCTACTG 1378
Query 1376 ATCCTTCTGATGATACTAACAAGAAGGTTGCAGATTCACATGGTACGGACACACCCATGA 1435
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1379 ATCCTTCTGATGATACTAACAAGAAGGTTGCAGATTCAAATGATACGGACACACCCATGA 1438
Query 1436 TTGACGCTGAT-GATGCTAATGTGAACATGGCGGGAACACAGGAGGCAAAAACCGCTGC 1493
||||| ||| | ||||||||||||||||||| ||||||||| || ||| ||||||||||
Sbjct 1439 TTGACACTG-TCGATGCTAATGTGAACATGGAGGGAACACATGAAGCAGAAACCGCTGC 1496
Score = 187 bits (101), Expect = 3e-46
Identities = 171/201 (85%), Gaps = 20/201 (10%)
Strand=Plus/Plus
Query 1494 GGGAACACAGGAGGCAAAAACCGCTGCTGTTACC-TCTGATGTCAAAGATCAAGATGCTT 1552
||||||||| || ||| |||||||||| |||||| | ||||| |||||||||||||||||
Sbjct 1470 GGGAACACATGAAGCAGAAACCGCTGCCGTTACCAT-TGATGCCAAAGATCAAGATGCTT 1528
Query 1553 CTCAACTCGATACGAGGATTGTGAACACAGAACCATTACCGGTTTCTCATGATCAGGCGA 1612
|||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1529 CTCAACTCGATAAGGGGATTGTGAACACAGATCCATTACCGGTTTCTCATGATCAGG--- 1585
Query 1613 ATGTAGAGCCATTGAGAAATGAGATATCAACAGATGCTGCTAAAGCTGATCCTGGAGTAG 1672
|| | | | | ||| |||||||||||||||| |||||||||||||||||||
Sbjct 1586 -TG-A-A----T-G-----TGA--TATCAACAGATGCTGCAAAAGCTGATCCTGGAGTAG 1630
Query 1673 ATTCATCGACACAAAAGCAAG 1693
|||||||||||| ||||||||
Sbjct 1631 ATTCATCGACACGAAAGCAAG 1651
> AT1G18610.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6405645-6409297 FORWARD LENGTH=2150
Length=2150
Score = 859 bits (465), Expect = 0.0
Identities = 852/1035 (82%), Gaps = 42/1035 (4%)
Strand=Plus/Plus
Query 21 ACAAGTGGGTCTCGGTGATTCTTCTTCCGGGCCCGGGAATAGATGGGGACACACTTGTAA 80
|||||||||||||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct 167 ACAAGTGGGTCTCGGTGAGTCTTCTTCCGGGCCCGGTAAGAGGTGGGGTCACACTTGTAA 226
Query 81 CGCCATTAAAGGTGGTCGATTTCTCTACGTTTTCGGTGGTTTTGGCAGAGACAATTGCTT 140
|||||||||||| ||| | |||||||| ||||||||||| | ||||||||| ||||||
Sbjct 227 CGCCATTAAAGGAGGTAGCTTTCTCTATGTTTTCGGTGGCTATGGCAGAGATAATTGCCA 286
Query 141 AACAAATCAAGTTCATGTCTTCGACACT-CAAACGCAGTTATGGACTCGA-CCTGTAATC 198
||| |||||||| ||||| |||||| || |||| |||| ||||||||| | || | |||
Sbjct 287 AACCAATCAAGTCCATGTTTTCGACGCTGCAAA-GCAGATATGGACTC-AGCCAATGATC 344
Query 199 AATGGTGTACCGCCCTGC-CCGAGGGACAGTCACAGCTGTACAACAGTTGGGGATAACCT 257
||||| ||| ||| | || |||||||||||||||||||||||||| || || || ||
Sbjct 345 AATGGCACACC-TCCTCCTCCCAGGGACAGTCACAGCTGTACAACAGTCGGCGACAATCT 403
Query 258 TTTTGTGTTTGGTGGTACTGATGGGA-CCAATTATCTCAACGATGTGCACATTCTAGATA 316
|||||||||||||||||||||| ||| || ||| || ||| || | ||||||||||
Sbjct 404 TTTTGTGTTTGGTGGTACTGAT-GGAGTTAACCCTCTTAAGGATTTGTATATTCTAGATA 462
Query 317 CTTCTTCACATACTTGGATATGCCCG-GATATTAGAGGG-GAAGGACCAGGGGCAAGAGA 374
|||||||||||||||||| ||| ||| | | |||| ||| || ||||| | |||||||||
Sbjct 463 CTTCTTCACATACTTGGAAATGTCCGAG-TGTTAG-GGGAGAGGGACCTGAGGCAAGAGA 520
Query 375 -GGCTCATAGTGC-AGCGCTTGTTGACAAACGTCT-TTTCATATTTGGCGGCTGTGGGAA 431
|| |||||| || | | || |||| ||| | || ||| | ||||| |||||||||||
Sbjct 521 AGG-TCATAGCGCCA-CACTGGTTGGTAAAAGGCTGTTTG-TCTTTGGTGGCTGTGGGAA 577
Query 432 ATCTTCTG--ATTCGGATGATGAAGTAT-TCTATAATGACCTTTACATACTTAATACAGA 488
|||||||| ||| |||| ||| | | | || |||||| |||||||| ||||||||||
Sbjct 578 ATCTTCTGGTATTA--ATGAAGAAATCTAT-TACAATGACGTTTACATATTTAATACAGA 634
Query 489 AACTTTTATGTGGAAACGTGCTGTAACA-TCTGGGAAACCGCCCTCTGCACGAGATAGCC 547
||||||| |||||||||| ||||| ||| | |||||| || || ||||| || |||||||
Sbjct 635 AACTTTTGTGTGGAAACGGGCTGTTACAAT-TGGGAATCCTCCATCTGCGCGGGATAGCC 693
Query 548 ACACTTGCTCAGCGTGGAAGAACAAAATCATTGT-AGTAGGTGGTGAAGATTTGGA--TG 604
| |||||||| |||||||||||||| | |||| | ||||||| |||||| ||| ||
Sbjct 694 ATTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTA-TAGGTGGCGAAGAT--GGACATG 750
Query 605 ACTATTATCTCTCTGACGTTCATATCCTTGATACAGATAAATTTGTTTGGAAGGAATTGA 664
|||| ||||| || || |||||||||||||||||||||| | || | ||||| || ||||
Sbjct 751 ACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTTATATGGAAAGAGTTGA 810
Query 665 GA-ACTTCAGGACAGTTGTTAACACCTCGAGCCGGTCATGTCACTGTTGCACTAGAGAGG 723
| |||||||| |||||||| ||||||||||| |||||||| |||||| |||| | ||||
Sbjct 811 -ATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACTGTTTCACTTGGGAGG 869
Query 724 AACTTATTTGTATTTGGAGGGTTTACGGATTCTCAGAATCTTTATGATGATCTATATGTG 783
||||| ||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 870 AACTTTTTTGTTTTTGGAGGGTTTACGGATGCTCAGAATCTTTACGATGATCTCTATGTG 929
Query 784 CTTGATTTGGAAACGGGTGTATGGTCCAAGGTAGTTGCTATGGAAGAAGGGCCATCTCCT 843
|||||| | || ||| || ||||||||||||| | | |||| |||||| |||||| ||
Sbjct 930 CTTGATGTCGATACGTGTATATGGTCCAAGGTTCTCACCATGGGAGAAGGACCATCTGCT 989
Query 844 AGATTCTCTTCTGCAGCGGTTTGTTTACATCCTTACAAGGCTGGTTCGTT-TT-TCTTTG 901
|| ||||||||||||| || |||| || ||||| |||| ||||||| || || || |||
Sbjct 990 AGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGTT--TTCTTGTCATTG 1047
Query 902 TTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACAT-TTACTACTTACACACAGAA 960
|||||||||||||||||||||| ||| ||||||||||||| || ||||||||| ||||
Sbjct 1048 TTGGTGGCTGCAATAAGAATCTCGAGGCGTTGGATGACATGTT-CTACTTACAGACAGGT 1106
Query 961 GGTGGATACGATGTCCAG-TTTAATCAAAATCCAGGGCGGTTGTCTCTTAGGAAACAAAT 1019
||||||||||| | || ||| |||||||| |||| ||||||||| | ||| ||| |
Sbjct 1107 CTTGGATACGATG-CAAGATTTGATCAAAATGTAGGGATGTTGTCTCTAAAGAAGCAATT 1165
Query 1020 GAAGCTAAAATGCCA 1034
|||| ||||||||||
Sbjct 1166 GAAGATAAAATGCCA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5