BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316373

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74340.1 | Symbols:  | dolichol phosphate-mannose biosynthes...   418    1e-116


> AT1G74340.1 | Symbols:  | dolichol phosphate-mannose biosynthesis 
regulatory protein-related | chr1:27948123-27951668 REVERSE 
LENGTH=529
Length=529

 Score =  418 bits (226),  Expect = 1e-116
 Identities = 236/241 (98%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  1    ATGGAATTAGCGGATCGAGCAGTCGGGCTTCTACTATCTTCAATCAGCTTATCCATATTC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  122  ATGGAATTAGCGGATCGAGCAGTCGGGCTTCTACTATCTTCAATCAGCTTGTCCATATTC  181

Query  61   ACGTACTATACTTTTTGGGTCATCATCCTGCCATTTGTAGATAGTGATCACTTCATCCAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  ACGTACTATACTTTTTGGGTCATCATCCTGCCATTTGTAGATAGTGATCACTTCATCCAC  241

Query  121  AAGTACTTCTTGCCCCAAGACTATGCCATTCTCGTACCTGTGTTTGCCGGCATAGCTCTC  180
            ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  242  AAGTACTTCTTACCCCAAGACTATGCCATTCTCGTACCTGTCTTTGCCGGCATAGCTCTT  301

Query  181  CTCTCTCTCATTTCCGTATTCATCGGCATGGTCATGCTCAAATCTAAAAAGAAGAAGGCT  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  302  CTCTCTCTCATTTCCGTATTCATCGGCATGGTCATGCTCAAATCCAAAAAGAAGAAGGCT  361

Query  241  T  241
            |
Sbjct  362  T  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5