BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316383

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) ...   364    4e-100


> AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) 
| chr1:27976502-27980404 REVERSE LENGTH=1202
Length=1202

 Score =  364 bits (197),  Expect = 4e-100
 Identities = 297/341 (87%), Gaps = 24/341 (7%)
 Strand=Plus/Plus

Query  258  GCTCTGTTATGTTTTTTCTTGTTGGATTGGCTCTAGCTTCCTCGCAGCTCGATTAGGACA  317
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  GCTCTGTTATG-TTTCTCTTGTTGGATTGGCTCTAGCTTCCTCGCAGCTCGATTAGGACA  380

Query  318  TTCCTTGAC-------CTT--A--A-------AGCTCTTGTGTTGGAGTGGTCAGTTCCT  359
            |||||||||        ||  |  |       ||||||| ||||||| ||||||||||||
Sbjct  381  TTCCTTGACTTTAAAGGTTGGAGTAGCTTCTCAGCTCTTATGTTGGACTGGTCAGTTCCT  440

Query  360  CGGTCACGGCTTGTTTGAGAAACGAGCTCCTGCACTTTTTA-ATAATCTACTCCAAGCTT  418
            ||| || |||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct  441  CGGACATGGCTTGTTTGAGAAACGAGCTCCTGCAC-TTTTAGACAATCTACTCCAAGCTT  499

Query  419  TTCTGATGGGTCCTTTCTTCGTGTTGCTCGAGGTGTTGCAGTCTGTTTTCGGGTACGAAC  478
            |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  500  TTCTTATGGGTCCTTTCTTTGTGTTGCTCGAGGTGTTGCAGTCTGTTTTCGGGTACGAGC  559

Query  479  CATACTCTGGATTTAAAGCACGCGTCAACTCCaagatagagagtgaaatcaaagaatgga  538
            ||||| |||||||||||||||||||| | |||||||||||||||| |||||| |||||||
Sbjct  560  CATACCCTGGATTTAAAGCACGCGTCGATTCCAAGATAGAGAGTGGAATCAAGGAATGGA  619

Query  539  gagaaa-gta-aag-agaagaagaagaagaagGTCACTTAA  576
            |||||| | | ||  || || ||| ||||||||||||||||
Sbjct  620  GAGAAAAGAAGAAACAGCAGCAGATGAAGAAGGTCACTTAA  660


 Score =  207 bits (112),  Expect = 7e-53
 Identities = 213/257 (83%), Gaps = 25/257 (10%)
 Strand=Plus/Plus

Query  1    ATGAGCAAGCGTATTGGATTGTTCGATCTAGAGAAGCATTTTGCTTTCTATGGAGCTTAT  60
            |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  34   ATGAGCAATCGCATCGGATTGCTCGATCTAGAGAAGCATTTTGCTTTCTATGGAGCTTAT  93

Query  61   CACAGCGATCCCATTAACATAATAATCCACACTGTAGAGAAACAAGTTC-TCATCTCCAC  119
            |||||| ||||||||||||| |||||||||||| |       |   ||| | ||   | |
Sbjct  94   CACAGCAATCCCATTAACATTATAATCCACACTCT-------C---TTCGT-AT-GGC-C  140

Query  120  ACACACTCTGTTCGTCTTCGCTACCCTTCTCTTCCTCTACTCTACGCCACCGATTTTAGA  179
            | | |       |||||||||||| || || |||||||||||||||||||||||||||||
Sbjct  141  A-A-A-------CGTCTTCGCTACTCTCCTTTTCCTCTACTCTACGCCACCGATTTTAGA  191

Query  180  TCACTCTCAATTAGGCTTCCTCCAA-TCACTGACTTTTGACAGTGTTTTGCGCTTGGACA  238
            ||||||||||||||| |||||| || || ||||| |||||  |||||||||| |||||||
Sbjct  192  TCACTCTCAATTAGGGTTCCTC-AAGTCGCTGACATTTGATGGTGTTTTGCGTTTGGACA  250

Query  239  TTGGTTTTACTCTCACT  255
            |||||||||| ||||||
Sbjct  251  TTGGTTTTACCCTCACT  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5