BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316385

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74458.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   346    6e-95


> AT1G74458.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 9 Blast hits to 9 proteins in 4 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:27986957-27987675 FORWARD LENGTH=523
Length=523

 Score =  346 bits (187),  Expect = 6e-95
 Identities = 239/262 (91%), Gaps = 11/262 (4%)
 Strand=Plus/Plus

Query  1    ATGTTCTTGGTTTTAGCTCTTCTATATCTCATGATCTCATGGAAGCCTGTCCTAATCACT  60
            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  145  ATGTTCTTGGTTTTAGCTCTTCTCTATCTCATGATCTCATGGAAGCCTCTCCTAATCACT  204

Query  61   GCAAGAACTGAGAAATCATCAACAGACCACTTTGAAACCAAGGGACAGGAATTGAA---T  117
            |||||| ||||| ||  ||||||||   ||||||||||||||||||||||||||||   |
Sbjct  205  GCAAGACCTGAG-AA--ATCAACAG---ACTTTGAAACCAAGGGACAGGAATTGAATCGT  258

Query  118  CAGATTAGCCACCTGGGACGCATTGAAACTGATCCTAAGGGAAGAACAA-GGACACGGAA  176
            ||||||||||| |||||||| ||||||| ||||||| || |||||| || ||||| ||| 
Sbjct  259  CAGATTAGCCATCTGGGACGTATTGAAAATGATCCTGAGAGAAGAA-AAGGGACAAGGAG  317

Query  177  GATGATGACCGTTGACGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC  236
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  GATGATGACCGTTGAGGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC  377

Query  237  TCCTCATTGTTCTGATTGCTAA  258
            |||||| |||||||||||||||
Sbjct  378  TCCTCACTGTTCTGATTGCTAA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5