BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316389
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74490.1 | Symbols: | Protein kinase superfamily protein | ... 1890 0.0
AT1G26970.1 | Symbols: | Protein kinase superfamily protein | ... 237 2e-61
> AT1G74490.1 | Symbols: | Protein kinase superfamily protein
| chr1:27994700-27996742 REVERSE LENGTH=1506
Length=1506
Score = 1890 bits (1023), Expect = 0.0
Identities = 1142/1201 (95%), Gaps = 2/1201 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAATTGCTTTGGATCTTGCTCAAAGATAAATGATAATGAGGACGATAATGTTGAC 60
|||||||||||||||| |||||| || |||| |||||||||||||||||||||| |||||
Sbjct 247 ATGGGGAATTGCTTTGAATCTTGTTCGAAGAGAAATGATAATGAGGACGATAATCTTGAC 306
Query 61 TCCTCAGTGAACTCCAAACCCTTTTCACGAGCTGATAGTGGTACTGGAAGAAGCTCGAAT 120
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 307 TCCTCAGTGAACTCGAAACCCTTTTCACGAGCTAATAGTGATACTGGAAGAAGCTCGAAT 366
Query 121 CTGTCATATCCATGGAGTTTAAAACCTCTCATTGCAAGAAAATGTGAAGCTAACA-TCAC 179
||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |
Sbjct 367 CTGTCATATCCATGGAGTTTAAAACCTCTCATTACAAGAAAATGTGAAGCTATCAGT-GC 425
Query 180 TCTACCTGCACCGCGCGGAGAAGGAGAAATAATGCATTCTCAATATTTGAAGTCCTTTAC 239
||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 TCTACCTCCACCGCACAAAGAAGGAGACATAATGCATTCTCAATATTTGAAGTCCTTTAC 485
Query 240 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGGGAAGG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 486 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGAGAAGG 545
Query 300 AGGGTTCGGGTTTGTTCACAAGGGCTGTGTTAATGGTGGACCTGGAATCGAACTTTCGGT 359
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 546 AGGGTTCGGGTTTGTTCACAAAGGCTGTATTAATGGTGGACCTGGAATCGAACTCGCGGT 605
Query 360 TGCTGTGAAGAAGCTTAAAACTGGAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 419
|||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 606 TGCTGTAAAGAAGCTTAAAACCGAAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 665
Query 420 GAATTATCTTGGAAGATTGCATCATCCTAATCTAGTGAAACTGATTGGATACTCCTTGGA 479
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 666 GAATTATCTTGGAAGATTGCATCATCCGAATCTAGTGAAACTGATTGGTTACTCCTTGGA 725
Query 480 AAACGAACACCGCCTTTTGGTTTACGAGCATATGCCTAATGGTAGTCTTGAAAATCATTT 539
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 726 AAACGAACACCGCCTTTTGGTTTACGAGCATTTGCCTAATGGTAGTCTTGAGAATCATTT 785
Query 540 GTTTGAAAGGGGTTCCAATGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 599
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GTTTGAAAGGAGTTCCAGTGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 845
Query 600 TGCTCGAGGACTATGTTTTTTGCACGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 659
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 846 TGCTCGAGGGCTATGTTTTTTGCATGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 905
Query 660 AGCAGCAAATATCCTTCTCGATTCAGAATTCAACGCCAAACTCTCAGACTTTGGATTAGC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 906 AGCAGCAAATATCCTTCTCGATTCAGGATTCAACGCCAAACTCTCAGACTTTGGATTGGC 965
Query 720 CAAAGAAGGTCCAAAGGACAACCGTTCACACGTGACAACCGAAGTCATGGGTACTGAAGG 779
||||||||||||||| || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 966 CAAAGAAGGTCCAAAAGATAACCGTTCACATGTGACAACAGAAGTCATGGGTACAGAAGG 1025
Query 780 TTACGCAGCTCCAGAATATCTAGCAACAGGTCATCTAACAACAAAATGTGATGTCTACAG 839
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1026 TTACGCAGCTCCAGAGTATCTAGCAACAGGTCATCTAACAACGAAATGTGATGTCTACAG 1085
Query 840 CTTCGGTGTAGTGTTGCTAGAGATTCTATCTGGACGTCGAGTCATAGACAAAACCAAAGC 899
||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct 1086 CTTCGGTGTAGTGTTGCTAGAGATTCTCTCTGGGCGTCGAGTCATAGACAAATCCAAATC 1145
Query 900 ACGGGAAGAAGAAAGCCTAGTGGAATGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 959
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1146 ACGGGAAGAAGAAAACCTAGTGGATTGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 1205
Query 960 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTAAGAAAGCAGCATTTATGAT 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1206 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTCAGAAAGCAGCGTTTATGAT 1265
Query 1020 GTCTTTCTTGGCTTTACAATGTATCGGAGAGGTTAAGGTTAGACCATCGATGATTGAGGT 1079
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1266 GTCTTTCTTGGCTTTACAATGTATCGGAGATGTTAAGGTTAGACCATCGATGCTTGAGGT 1325
Query 1080 CTTATCTCTTCTTGAGAAAGTTCCGATTCCAAGACATAGAAAGAGTAGAAGCAGAGGTTT 1139
| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1326 CGTATCTCTTCTTGAGAAAGTTCCAATTCCAAGACATAGAAAGAGTAGAAGCAAAGGTTT 1385
Query 1140 TGCTTATACTAACTCTGCTTCTATGTCTTCAAAACGGTTTCTCAGACACCCTAAGGACTA 1199
||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1386 TGCTTGTACTAACTCTGCTTCTATGCCTTCAAAACGGTTTCTCAGACATCCTAAGGACTA 1445
Query 1200 A 1200
|
Sbjct 1446 A 1446
> AT1G26970.1 | Symbols: | Protein kinase superfamily protein
| chr1:9359682-9361833 FORWARD LENGTH=1550
Length=1550
Score = 237 bits (128), Expect = 2e-61
Identities = 302/384 (79%), Gaps = 20/384 (5%)
Strand=Plus/Plus
Query 637 CAAGTCATTTACAGAGACTTCAAAGCAGCAAATATCCTTCTCGATTCAGAATTCAACGCC 696
|||||||| |||||||||||||| || | ||||| || || ||||| |||||||| | |
Sbjct 772 CAAGTCATATACAGAGACTTCAAGGCCTCCAATATTCTACTTGATTCGGAATTCAATG-C 830
Query 697 AAA-CTCTCAGACTTTGGATTAGCCAAAGAAGGTCCAA-AGGACAACCGTTCACACGTGA 754
||| || || || |||||||| || |||| ||| |||| ||| || | ||||||| |
Sbjct 831 AAAGCTTTCTGATTTTGGATTGGCGAAAGTAGGACCAACCGGA-GACAGAACACACGT-A 888
Query 755 -CAACCGAAGTCATGGGTACTGAAGGTTACGCAGCTCCAGAATATC-TAGCAACAGGTCA 812
||||| |||| ||||| ||| |||| || ||||| || ||||| | | || || ||||
Sbjct 889 TCAACCCAAGTGATGGGAACTCAAGGCTATGCAGCACCTGAATA-CGTTGCCACTGGTCG 947
Query 813 TCTAACA-ACAAAATGTGATGTCTACAGCTTCGGTGTAGTGTTGCTAGAGATT-CTATCT 870
||||| ||||| |||| ||||||||||||||||| || ||||||||| || || ||
Sbjct 948 GATAACAGCCAAAA-GTGACGTCTACAGCTTCGGTGTGGTCTTGCTAGAG-TTACTGTCG 1005
Query 871 GGACGTC-GAGTCATAGACAAAACCAAAGCACGG-GAAGAA-GAAAGCCTAGTGGAATGG 927
||||||| || | |||||||||| |||| | || | ||| |||| || || || |||
Sbjct 1006 GGACGTCTGA-CCGTAGACAAAACGAAAGTA-GGAGTGGAACGAAA-TCTGGTTGATTGG 1062
Query 928 GCAACACCTTACTT-GCGAGACAAGCGAAAAGTGTTTAGGATAATGGACACAAAGCTTGT 986
|||| ||||||||| | ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1063 GCAATACCTTACTTAG-GAGACAAAAGGAAAGTGTTTAGGATAATGGACACAAAGCTTGG 1121
Query 987 GGGTCAATACCCTAAGAAAGCAGC 1010
||| ||||| ||| | |||| |||
Sbjct 1122 GGGACAATATCCTCACAAAGGAGC 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5