BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316417
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74830.1 | Symbols: | Protein of unknown function, DUF593 |... 2529 0.0
AT1G18990.1 | Symbols: | Protein of unknown function, DUF593 |... 377 1e-103
> AT1G74830.1 | Symbols: | Protein of unknown function, DUF593
| chr1:28113423-28115229 REVERSE LENGTH=1711
Length=1711
Score = 2529 bits (1369), Expect = 0.0
Identities = 1553/1640 (95%), Gaps = 19/1640 (1%)
Strand=Plus/Plus
Query 1 ATGTTTATACAATTGCTCTGTTTTTTCTTGTTCTTGTTACTGCTTTTACAAGCCACAATG 60
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 37 ATGTATATACAATTGCTCTGTTTTTTCTTGTTCTTGTTTCTGCTTTTACAAGCCACAATG 96
Query 61 TCTAAACGTTCTTTCAAGAAATTTGTGGAACAAGAACTCGGATCTCGTCCTCATTTCCTC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 97 TCTAAACGTTCTTTCAAGAAATTTGTGGAACAAGAACTCGGATCTCTTCCTCATTTCCTC 156
Query 121 ATCTACACGGTTCTTGAATGGAGCCTCATCGTTATCCTCTTCATCGACGGCATAATCGCC 180
|||||||| |||||||||||||||||||| ||| ||||||||||||||||| | ||||||
Sbjct 157 ATCTACACTGTTCTTGAATGGAGCCTCATTGTTTTCCTCTTCATCGACGGCGTTATCGCC 216
Query 181 TTTCTATCAAACCAATAT-GCCAAATTCTTCGACCTCAACATTCCTTGTCTTCTCTGCAC 239
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TTTCTGTCAAACCAAT-TCGCCAAATTCTTCGACCTCAACATTCCTTGTCTTCTCTGCAC 275
Query 240 CAGAATCGACCACATTCTCGTCCCTAGAGACCCTCGATTCTATTACAATGAGTCAATCTG 299
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 276 CAGAATCGACCACATTCTCGTCCCTAGAGACCCTCAATTCTATTACAACGAGTCAATCTG 335
Query 300 CGACTCTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCATAAGAAGCTATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 336 CGACTCTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCATAAGAAGCTCTC 395
Query 360 TGAGATCAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAGAAAGAATCTGA 419
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 396 TGAGATTAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAGAAAGATTCTGA 455
Query 420 CTGTGATACTTATAAGTCTCTCATTGGCATCTTACACAAAGATCTCGAGCTTCTCATTGA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 456 CTGTGATACTTATAAGTCTCTCATTGGCATCTTACATAAAGATCTCGAGCTTCTCATTGA 515
Query 480 CGATGAACGAGAGCTTCCCTTGGCGTTCAAGAAAGACGACAATTTTA-TTCAGACAACAA 538
|||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 516 CGATGAACGAGACCTTCCCTTGGCGTTCAAGAAAGACGACAA-TTTAGTCCAGACAACAA 574
Query 539 AAAATCTGGTGGATCACAAG---AACAACATTAAAAATGATAGCTTGAAGCAACATTGTT 595
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 575 AAAATCTGGTGGATTACAAGACTAACAACATTAAAAATGATAGCTTGAAGCAACATTGTT 634
Query 596 CGTGTTGCGGAGAATTATTGAAGATAAAATCTGAGAAGTTGCCGAATAACAACAATTCTT 655
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 635 CGTGTTGTGGAGAATTATTGAAGATAAAATCTGAGAAGTTACCGAAGAACAACAATTCTT 694
Query 656 TCCTTGCTCCTGCTCCTTCTCCTAGGGTTTCGAACAACAAACTGTCTGAAAGA-GAATCT 714
|||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||
Sbjct 695 TCCTTGCTCCTGCTCCTTCTCCTAGGGTATCGCACAACAAACTGTCTGAAA-ACGAATCT 753
Query 715 GAGTTTAAGGATCTAGATGTGGACAGAACACCGAGCTTTGTTAGAGGAGGTAACAAGTTT 774
|||||||||||| | ||||||||| ||||||| || ||||| ||||||||||||||||||
Sbjct 754 GAGTTTAAGGATATGGATGTGGACCGAACACCAAGTTTTGTAAGAGGAGGTAACAAGTTT 813
Query 775 TTTGGGATCCCTCTGTCTGATTCGGTGCAAAATAGTCCACGATGGTCCGTTCGATCTCTT 834
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 814 TTTGGGATCCCTCTGTCTGATTCGGCGCAAAACAGTCCACGATGGTCCGTTCGATCTCTT 873
Query 835 AAGAAATCTC-TTTTGGATAAGACAGAGAATGCTTCGGACACGGCAGATCCAAACGGTGA 893
|||||||| | ||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 874 AAGAAATC-CGTTTTGAATAAGACAGAGAATGCTTCGGACACGACAGATCCAACCGGTGA 932
Query 894 ATCCATCCTTAATCAGCTCAAGAAAGAGGTTCGCTTGGACAAGAAGTCACTCATTGATTT 953
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ATCCATTCTTAATCAGCTCAAGAAAGAGGTTCGCTTGGACAAGAAGTCACTCATTGATTT 992
Query 954 GTATATGGAGTTAGATGAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAAGCGATGGC 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATATATGGAGTTAGATGAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAAGCGATGGC 1052
Query 1014 TATGATCACGAGGCTTCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TATGATCACGAGGCTTCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCA 1112
Query 1074 AAGAATGATGGATGAACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCGATGAGTACCGA 1133
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1113 AAGAATGATGGATGAACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCTATGAGTAGTGA 1172
Query 1134 ATTGGCGAAGAGGGAGGAGGAAATGAAGGAGCTTGAAGCTGAGTTTGAGGCTTACAGAGA 1193
||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1173 ATTGGCGAAGAGGGAAGAGGAAATGAAGGAGCTTGAAGCTGAATTTGAGGTTTACAGAGA 1232
Query 1194 GAAATATGGAAGTTTGACAGATGAAGAAGATGCAAGAGAAGAGTTTCATGAACAAAACGG 1253
|||||||||| ||||||| ||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1233 GAAATATGGATGTTTGACTGATCAAGAAGATGCAAGGGAAGAGTTTCATAAACAAAACGG 1292
Query 1254 CAATGCTAGTGCAAATGATGATTGCCAAGAAACCAAACCAGTCTCGGATTTAGGC-GTCT 1312
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1293 CAATGCTAGTGCATATGATGATTGCCAAGAAACCAAACCAGTCTCGGATTT-GGCTGTCT 1351
Query 1313 GTTCTTCTAATCAGGAGGAGAATGGCGAAAACATCGATCGAAATGGGTCTACTCAATCTA 1372
|||||| |||||| |||| ||||||||||||||||||| ||||||| | | | || |
Sbjct 1352 CTTCTTCAAATCAGCAGGAAAATGGCGAAAACATCGATCAAAATGGG-C-A---A-TCGA 1405
Query 1373 AAAGGTCAGAGGAGTCTACCGCGGAAAAGGATGTCTCTGCAGATGAAGAAAAAGGGACAG 1432
||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 1406 AAAGGTCAGAGGAGTCTACCGCGGAGAATGTTGTCTCTGCAGATGAAGAAAAAGGGAGTG 1465
Query 1433 AGAGCAAAGAAGGGATAGTAAAAGAGCTTTCAGATATCACAGAGAGACTAAGTGCTCTTC 1492
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1466 AAAGCAAAGAAGGGATAGTAAAAGAGCTTTCAGAGATCACAGAGAGACTAAGTACTCTTC 1525
Query 1493 AATCAAATGGTGATCTGTTGAAACATATTGCTGATGTTTTGGATGTTAGTGAAGGAGAAG 1552
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1526 AATCAAATGGTGATTTATTGAAACACATTGCTGATGTTTTGGATGTTAGTGAAGGAGAAG 1585
Query 1553 CAATTCTACTGCAGATCTCTCAGAATTTGCACATGCTTCGTAGTTTTGTTGCTATGCCTT 1612
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 CAATTCTATTGCAGATATCTCAGAATTTGCACATGCTTCGTAGTTTTGTTGCTATGCCTT 1645
Query 1613 CAGAATCCATGAACTTGTAA 1632
| ||||||||||||||||||
Sbjct 1646 CTGAATCCATGAACTTGTAA 1665
> AT1G18990.1 | Symbols: | Protein of unknown function, DUF593
| chr1:6558678-6560489 REVERSE LENGTH=1732
Length=1732
Score = 377 bits (204), Expect = 1e-103
Identities = 376/458 (82%), Gaps = 16/458 (3%)
Strand=Plus/Plus
Query 57 AATGTCTAAACGTTCTTTCAAGAAATTT-GTGGAACAAGAACTCGGATCTCGT-CCTCAT 114
||||||||| ||||| |||||| ||||| | ||| ||||||| ||| | | || ||
Sbjct 57 AATGTCTAACCGTTCCTTCAAG-AATTTCATAGAAGAAGAACTTGGAAC-ATTCCCACAG 114
Query 115 TTCCTCATCTACACGGTTCTTGAATGGAGCCTCATCGTTATCCTCTTCATCGACGGCATA 174
||| | |||||| | |||||||||||| ||||||| |||||||||||||||| ||| |
Sbjct 115 TTCTTAATCTACGCTCTTCTTGAATGGATCCTCATCATTATCCTCTTCATCGATGGCTTC 174
Query 175 ATCGCCTTTC-TATCAAACCAATAT-GCCAAATTCTTCGACCTCAACATTCCTTGTCTTC 232
||| ||||| | || |||||| || || |||||||| |||||||| || || |||||||
Sbjct 175 CTCG-CTTTCTTCTCTAACCAA-ATCGCTAAATTCTTTGACCTCAAAATCCCCTGTCTTC 232
Query 233 TCTGCACCAGAATCGACCACATTCTCGTC-CCTAGAGACCCTCGA-TTCTATTACAATGA 290
||||||| ||| ||||||| |||| ||| | ||| ||||| || ||||||||||| ||
Sbjct 233 TCTGCACTAGACTCGACCATGTTCTTGTCAGC-AGAAACCCT-GATTTCTATTACAACGA 290
Query 291 GTCAATCTGCGACT-CTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCATA 349
|| || ||||| | ||||||||||||| || || ||||| ||||| || ||||| || |
Sbjct 291 CTCGATATGCGA-TGCTCACAAGAAGAATGTCTCATCTCTCGCTTACTGTCATGTGCACA 349
Query 350 AGAAGCTATCTGAGATCAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAGA 409
|||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 350 AGAAACTCTCTGAGATCAAACGTATGTGTGAAGGATGTCTTCTCTCTTTCGCTACCGAGA 409
Query 410 AAGAATCTGACTGT-GATACTTATAAGTCTCTCATTGGCATCTTACACAAAGATCTCGAG 468
||||| | || ||| |||||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct 410 AAGAAACAGA-TGTTGATACTTACAAGTCTCTTATTGGAATCTTGCATAAGGATCTTGAG 468
Query 469 CTTCTCATTGACGATGAACGAGAGCTTCCCTTGGCGTT 506
||||| || ||||||||||| ||||||| ||||||||
Sbjct 469 CTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGTT 506
Score = 315 bits (170), Expect = 1e-84
Identities = 406/518 (78%), Gaps = 24/518 (5%)
Strand=Plus/Plus
Query 736 GACAGAACACCGAGCTTTGTTAGAGGAGGTAACAAGTTTTTTGGGATCCCTCTGTCTGAT 795
|||||||| ||||| ||||| | ||||||||| ||||| ||||| || || || |||||
Sbjct 799 GACAGAACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGAC 858
Query 796 TCGG-TGCAAAATAGTCCACGATGGTCCGTTCGATCTCTTAAGAAATCTCTTTTGGATAA 854
|||| | || |||||||| |||||||| |||||||| | |||||| || ||| | |
Sbjct 859 TCGGCT-CAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAA--TC-TTTCG-T-T 912
Query 855 GACAGAGAATGCTTCGGACACG-GCAGAT-CCAAACGGTGAATCCATCCTTAATCAGCTC 912
|| |||||| || ||| | | | || | | || || || || ||| | || ||
Sbjct 913 GA-TCAGAATGGTTTGGAGA-GCGAAG-TGTTGGATGGAGATTCGATACTTCAGCATCTA 969
Query 913 AAGAAAGAGGTTCGCTTGGACAAG-AAGTCACTCATTGATTTGTATATGGAGTTAGATGA 971
|| | | ||||| | ||||| | ||||| | || |||||||||||||||||||||||
Sbjct 970 AATAGACAGGTTAGATTGGA-TCGCAAGTCGTTGATGGATTTGTATATGGAGTTAGATGA 1028
Query 972 AGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAA-GCGATGGCTATGATCACGAGGCTTC 1030
|||||| |||||||||||||||||||| ||| || || |||||||||||||| || ||||
Sbjct 1029 AGAGAGGAGTGCTTCAGCTGTTGCAGCAAAC-AATGCAATGGCTATGATCACAAGACTTC 1087
Query 1031 AAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCAAAGAATGATGGATGAAC 1090
|||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| |
Sbjct 1088 AAGCAGAGAAAGCTGCGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGC 1147
Query 1091 AAGCAGAGTATGACCAAGAAGCTTTGCAGTCGATGAGTACCGAATTGGCGAAGAGGGAGG 1150
||||||| ||||| ||||||||||||||||| |||| | |||| ||||| || |
Sbjct 1148 AAGCAGAATATGATCAAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGAAG 1207
Query 1151 AGGAAATGAAGGAGCTTGAAGCTG-AGTTTGAGGCTTACAGAGAGAAATATGGAA-GTTT 1208
|||||||||| ||||||||||||| | || || | ||| ||| || ||||||| |||
Sbjct 1208 AGGAAATGAAAGAGCTTGAAGCTGGAATT-GAAGTTTATAGATTGAGATATGGATTGTT- 1265
Query 1209 GACAGATGAA-GAAGATGCAAG-AGAAGAGTTTCATGA 1244
|| ||| ||| || || | ||| ||| ||||||| |||
Sbjct 1266 GAGAGAAGAAAGAGGA-G-AAGCAGAGGAGTTTCTTGA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5