BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316423

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74890.1 | Symbols: ARR15 | response regulator 15 | chr1:281...   961    0.0  


> AT1G74890.1 | Symbols: ARR15 | response regulator 15 | chr1:28131590-28132710 
REVERSE LENGTH=621
Length=621

 Score =  961 bits (520),  Expect = 0.0
 Identities = 587/619 (95%), Gaps = 6/619 (1%)
 Strand=Plus/Plus

Query  1    ATGGCACTCAGAGAGATT-Gcttcttcttct-tcttcttcttcttcACCTGAGTTACATG  58
            ||||| ||||||||  ||  ||||||||| | ||||||||||||||||| ||||||||||
Sbjct  1    ATGGCTCTCAGAGA-TTTATCTTCTTCTT-TATCTTCTTCTTCTTCACCGGAGTTACATG  58

Query  59   TTCTCGCTGTTGATGATAGTTTCGTTGATCGTAAGGTTATTGAGAGATTGCTTAAGATCT  118
            |||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  59   TTCTTGCCGTTGATGATAGTTTCGTGGATCGTAAAGTTATTGAGAGATTGCTTAAGATCT  118

Query  119  CTGCTTGTAAAGTGACGACTGTTGAGAGTGGGACTAGGGCTCTTCAGTATCTTGGTTTAG  178
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  119  CTGCTTGTAAAGTGACGACTGTTGAGAGTGGGACTAGGGCTCTGCAGTATCTTGGTTTAG  178

Query  179  ATGGAGACAATGGATCTTCTGGTCTTAAGGATTTGAAGGTGAACTTGATAGTGACAGATT  238
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  179  ATGGAGACAATGGATCTTCTGGTCTTAAGGATTTGAAAGTGAACTTGATAGTGACGGATT  238

Query  239  ACTCAATGCCGGGATTAACAGGATATGAACTCCTCAAGAAGATCAAAGAGTCTTCAGCAT  298
            | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  239  ATTCAATGCCGGGACTAACAGGATATGAACTCCTCAAGAAGATCAAAGAGTCTTCAGCAC  298

Query  299  TCAGAGAAATCCCAGTAGTTATAATGTCGTCCGAGAACATACAACCTCGTATAGAACAAT  358
            ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct  299  TCAGAGAAATCCCAGTAGTGATAATGTCTTCTGAGAACATACAACCTCGTATAGAACAAT  358

Query  359  GTATGATAGAAGGAGCAGAGGA-TTTCCTGCTAAAACCGGTGAAATTAGCAGATGTGAAG  417
            |||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||
Sbjct  359  GTATGATAGAAGGAGCAGAGGAGTTTT-TGCTAAAACCGGTGAAATTAGCTGATGTGAAG  417

Query  418  CGCTTAAAAGAACTTATTATGAGAGGTGGTGAAGCTGGAGAAGGaaaaaccaaaaaaCTT  477
            || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct  418  CGTTTAAAAGAACTTATAATGAGAGGTGGTGAAGCTGAAGAAGGAAAAACCAAAAAACTT  477

Query  478  AGTCCTAAGAGAATCTTACAAAACGACATTGATTCATCTCCATCATCTTCATCAACATCT  537
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  478  AGTCCTAAGAGAATCCTACAAAACGACATTGATTCATCTCCATCATCATCATCAACATCT  537

Query  538  TCATCATCGTCGTCTCATGATGTTTCCTCTCTTGATGACGACATTCCATCTTCCAAGAGG  597
            ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct  538  TCATCATCGTCGTCTCATGATGTTTCCTCCCTTGATGACGACACTCCATCTTCCAAGAGG  597

Query  598  ATCAAATTAGAGTCTAGGG  616
            |||||||||||||||||||
Sbjct  598  ATCAAATTAGAGTCTAGGG  616



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5