BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316436
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75050.1 | Symbols: | Pathogenesis-related thaumatin superf... 1177 0.0
AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein 3... 811 0.0
AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene 5 ... 516 1e-145
AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superf... 58.4 1e-07
> AT1G75050.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:28180116-28181062 FORWARD LENGTH=741
Length=741
Score = 1177 bits (637), Expect = 0.0
Identities = 703/735 (96%), Gaps = 3/735 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCGAATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAGCGGCATTGCT 60
Query 61 GTTT---CCGCCACCGTCTTCACATTACAGAACAGTTGTCCTTACACCGTTTGGCCGGGA 117
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 GTTTCCGCCGCCACCGTCTTCACTTTACAGAACAGTTGTCCTTACACCGTTTGGCCTGGA 120
Query 118 ATTCTCTCCGGTAACGACAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGGCGCT 177
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 121 ATTCTCTCCGGCAACGACAACACCCTCGGCGACGGCGGATTTCCCTTAACACCAGGCGCT 180
Query 178 TCCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGC 237
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 TCCGTACAGCTCACGGCTCCTGCAGGATGGTCAGGACGGTTCTGGGCTCGTACCGGCTGC 240
Query 238 AACTTCGACGCCTCCGGCCACGGTAACTGCGTCACCGGAGACTGCGGTGGCGTTCTAAAA 297
||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||
Sbjct 241 AACTTCGACGCCTCCGGCCACGGTAACTGCGGCACCGGAGACTGCGGCGGTGTTCTTAAA 300
Query 298 TGTAACGGCGGCGGAGTTCCACCAGTCACTCTTGCTGAATTCACACTCGTTGGCGATGGC 357
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 301 TGTAACGGCGGCGGAGTTCCACCAGTCACTCTGGCTGAATTCACACTTGTAGGCGACGGC 360
Query 358 GGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGGATTAAA 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCAAGGATTTCTACGACGTGAGTCTCGTCGACGGTTACAATGTCGAGATGGGGATTAAA 420
Query 418 CCTCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCAACGCGGTT 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CCTCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGCGTCGCCGACGTCAACGCGGTT 480
Query 478 TGTCCTAACGAGCTTCGGATCATGGATCCACATACCGGAATCATCGCGGCGTGTAAAAGC 537
|| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TGCCCTAACGAGCTTCGGCTCATGGATCCACATACAGGAATCATCGCGGCGTGTAAAAGC 540
Query 538 GCTTGTGCGGCGTTTAATTCTGAGGAATTCTGTTGTACCGGTGCTCACGCGACGCCGCAA 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GCTTGTGCGGCGTTTAATTCTGAGGAGTTCTGTTGTACCGGTGCTCACGCGACGCCGCAA 600
Query 598 ACTTGCTCTCCGACGCATTACTCGGCGATGTTTAAAAGCGCTTGCCCTGGCGCTTATAGT 657
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 601 ACTTGTTCTCCGACGCATTACTCGGCGATGTTTAAAAGCGCTTGCCCTGGTGCTTACAGT 660
Query 658 TACGCCTATGACGACGCCACAAGCACCTTCACTTGTACCGGATCTAACTACTTGATCTCT 717
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TACGCCTACGACGACGCCACGAGCACCTTCACTTGTACCGGCTCTAACTACTTGATCTCT 720
Query 718 TTCTGCCCCACCCGG 732
|||||||||||||||
Sbjct 721 TTCTGCCCCACCCGG 735
> AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein
3 | chr1:28174378-28175383 FORWARD LENGTH=909
Length=909
Score = 811 bits (439), Expect = 0.0
Identities = 651/751 (87%), Gaps = 23/751 (3%)
Strand=Plus/Plus
Query 1 ATGGCG-AATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGC 59
|||||| || | ||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 41 ATGGCGAAAAT-CTCCAGTATTCACATTCTCTTCTTCGTCTTCATCACAAGTGGCATTGC 99
Query 60 TGTTTCCGCCACCGTCTTCACATTACAGAACAGTTGTCCTTACACCGTTTGGCCGGGAAT 119
|| |||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 100 TGATTCCGCCACCGTATTCACTTTACAAAACAGTTGTGCGTACACCGTTTGGCCGGGAAC 159
Query 120 TCTCTCCGGTAACGA-CAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGGCGCTT 178
||||||||| ||| | || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 160 TCTCTCCGGCAAC-AGCATCACCCTCGGCGACGGCGGATTTCCCTTAACTCCAGGCGCTT 218
Query 179 CCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCA 238
|||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 219 CCGTGCAGCTCACGGCTCCTACCGGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCA 278
Query 239 ACTTCGACGCCTCCGGCCACGGTAACTGCGTCACCGGAGACTGCGGTGGCGTTCTAAAAT 298
|||| ||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 279 ACTTTGACGCCTCCGGTCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAAT 338
Query 299 GTAACGGCGGCGGAGTTCCACCAGTC-ACTCTTGCTGAATTCACAC-TCGT-TG--GCGA 353
||| ||||||||||||||| |||| | ||||| || |||||||| | | | | || |
Sbjct 339 GTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCGGAATTCAC-CGTGGGATCAAGCAA 396
Query 354 TGGCGGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGGAT 413
|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 397 TGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTAAAGATGGGGAT 456
Query 414 TAAACCTCAAGGAGG-TTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCAACG 472
||||| || ||||| ||| || ||||| | ||||| ||||| ||| | ||| ||||||
Sbjct 457 AAAACCACAGGGAGGATTC-GGAAATTGCAAATACGCAGGCTGCGTCTCGGACATCAACG 515
Query 473 CGGTTTGTCCTAACGAGCTTCGGATCATGGATCC-ACATACCGGAA-TCATCGCGGCGTG 530
| |||| |||| ||||||| ||||||||||||| | || | |||| | ||||||||||
Sbjct 516 AGATTTGCCCTAGCGAGCTTAGGATCATGGATCCGA-ATTCGGGAAGTG-TCGCGGCGTG 573
Query 531 TAAAAGCGCTTGTGCGGCGTTTAATTCTGA-GGAATTCTGTTGTACCGGTGCTCACGCGA 589
||| |||||||| |||||||||| ||| | |||||| || ||||| |||||||||||||
Sbjct 574 TAAGAGCGCTTGCGCGGCGTTTAGTTC-GCCGGAATTTTGCTGTACTGGTGCTCACGCGA 632
Query 590 CGCCGCAAACTTGCTCTCCGACGCATTACTCGGCGATGTTTAA-AAGCGCTTGCCCTGGC 648
||||||||||||| ||||||||| |||||||| | |||||||| || |||||| ||| ||
Sbjct 633 CGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTTAAGAA-CGCTTGTCCTAGC 691
Query 649 GCTTATAGTTACGCCTATGACGACGCCA-CAAGCACCTTCACTTGTACCGGATCTAACTA 707
|||||||||||||| || |||||||| | | ||||| |||||||||||||||||||||||
Sbjct 692 GCTTATAGTTACGCTTACGACGACGC-ATCGAGCACTTTCACTTGTACCGGATCTAACTA 750
Query 708 CTTGATCTCTTTCTGCCCCACCCGGTCTTAA 738
||||||| |||||||||| |||| |||||||
Sbjct 751 CTTGATCACTTTCTGCCCTACCCAGTCTTAA 781
> AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene
5 | chr1:28177703-28178940 FORWARD LENGTH=980
Length=980
Score = 516 bits (279), Expect = 1e-145
Identities = 599/746 (80%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 1 ATGGCGAATTA-CTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGC 59
||||| || || ||| |||||||||||||||||| | || |||||||||| |||||||||
Sbjct 52 ATGGC-AAATATCTCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAGCGGCATTGC 110
Query 60 TGTT-TCCGCCACCGTCTTCACAT-TACA-GAACAGTTGTCCTTA-CACCGT-TTGGCCG 114
|||| | ||||| | |||||| | || | ||||| ||| || || |||||| | ||||
Sbjct 111 TGTTAT-GGCCACAGACTTCAC-TCTA-AGGAACAATTG-CCCTACCACCGTCTGGGCC- 165
Query 115 GGAATTCTCTCCGGT-AACGACAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGG 173
|||| |||| ||||| || ||| || |||||||| || |||||| |||||||| ||
Sbjct 166 GGAACTCTCGCCGGTCAAGGAC-CCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGG 224
Query 174 CGCTT-CCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCG 232
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 225 TGCTTCCCG-ACAGCTCACGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 283
Query 233 GCTGCAACTTCGACGCCTCCGGCCACGGTA-ACTGCGTCACCGGAGACTGCGGTGGCGTT 291
|||||||||| ||||||||||| |||||| | || || ||||||||||| ||||| |
Sbjct 284 GCTGCAACTTTGACGCCTCCGGAAACGGTAGA-TGTGTAACCGGAGACTG---TGGCGGT 339
Query 292 CTAAAATGTAACGGCGGCGGAGTTCCACCAGTCACTCTTGCTGAATTCACACTCGTTGGC 351
|||| ||||||||||||||||||||| || |||||||| ||||||||||| || || |||
Sbjct 340 CTAAGATGTAACGGCGGCGGAGTTCCTCCCGTCACTCTGGCTGAATTCACTCTAGTAGGC 399
Query 352 GATGGCGGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGG 411
||||||||||| ||||||||||| ||||||||||| || |||||||||||| || |||||
Sbjct 400 GATGGCGGCAAAGATTTCTACGATGTGAGCCTCGTAGATGGTTACAATGTCAAGCTGGGG 459
Query 412 ATTAA-ACC-TCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCA 469
|| || ||| || ||||| || || |||||| | ||||| ||||||||| | ||| |||
Sbjct 460 AT-AAGACCATCC-GGAGGATCGGGAGATTGCAAATACGCAGGCTGTGTCTCTGACCTCA 517
Query 470 ACGCGGTTTGTCCTAACGA-GCTTC-GGATCATGGATCCACATACCGGAATCATCGCGGC 527
|||||| ||| || || | |||| || ||||||||| | | || ||| ||| |||
Sbjct 518 ACGCGGCTTGCCCCGAC-ATGCTTAAGG-TCATGGATC-AGA-AC---AATG-TCGTGGC 569
Query 528 GTGTAAAAGCGCTTGTGCG-GCGTTTAATTCTGAGGAAT-TCTGTTGTACCG-GT-GCTC 583
|| || || || |||| | | ||||||| | || ||| | || || ||| | |||
Sbjct 570 CTGCAAGAGTGCCTGTGAGAG-GTTTAATACGGATCAATAT-TGCTG--CCGTGGAGCTA 625
Query 584 ACGCGACGCCGCAAACTTGCTC-TCCGACGCATTACTCG-GCGATGTTT-AA-AAGCGCT 639
||| | |||| ||||||| || ||| ||| | |||||| | ||| ||| || || ||||
Sbjct 626 ACGATAAGCCGGAAACTTG-TCCTCCCACGGACTACTCGAG-GAT-TTTCAAGAA-CGCT 681
Query 640 TGCCCTGGCGCTTATAGTTACGCCTATGACGACGCCACAAGCACCTTCACTTGTACCGGA 699
||||||| ||| ||||| ||||| |||||||||| || |||||||||||||||||||||
Sbjct 682 TGCCCTGACGCCTATAGCTACGCTTATGACGACGAAACGAGCACCTTCACTTGTACCGGA 741
Query 700 TCTAACTACTTGATCTCTTTCTGCCC 725
|||||||| ||| ||||||||||
Sbjct 742 GCTAACTACGAAATCACTTTCTGCCC 767
> AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:29204747-29206217 FORWARD LENGTH=1071
Length=1071
Score = 58.4 bits (31), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 2/38 (5%)
Strand=Plus/Plus
Query 363 GGATTTCTACGACGTGAGCCTCGTCGACGG-TTACAAT 399
|||||||||||||||||||||||||||||| || ||||
Sbjct 543 GGATTTCTACGACGTGAGCCTCGTCGACGGATT-CAAT 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5