BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316461
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75300.1 | Symbols: | NmrA-like negative transcriptional re... 588 3e-167
AT1G75280.1 | Symbols: | NmrA-like negative transcriptional re... 449 2e-125
AT1G75290.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 361 8e-99
AT1G75295.1 | Symbols: | other RNA | chr1:28255327-28257139 RE... 296 2e-79
> AT1G75300.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:28255495-28257040 FORWARD LENGTH=1139
Length=1139
Score = 588 bits (318), Expect = 3e-167
Identities = 352/369 (95%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACATGGGAGAATTC 60
||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 ATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGGAGAATTC 117
Query 61 ATCGTTGAAGGGAGCGCGAAAGCTAGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 ATCGTTGAAGGGAGCGCGAAAGCCGGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 177
Query 121 CTCTCCGATCCTGTCAAGAGGAAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACAATA 180
||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 178 CTCTCTGATCCTGTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCACAATA 237
Query 181 CTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGATGTG 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 CTACACGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTGATGTG 297
Query 241 GTGATATCAACCATCGGGCACAAGCAAATCTTGGATCAAACCAAGATCATTTCCGCCATT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 GTGATATCAACCATCGGGCACAAGCAAATCTTTGATCAAACCAAGATCATTTCCGCCATT 357
Query 301 AAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGAGAGA 360
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 358 AAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGGCTGAGTTTGGGATAGACGTTGAGAGG 417
Query 361 ACAAGTGCG 369
|| ||||||
Sbjct 418 ACCAGTGCG 426
Score = 473 bits (256), Expect = 9e-133
Identities = 362/408 (89%), Gaps = 27/408 (7%)
Strand=Plus/Plus
Query 370 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAA----T 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 464 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCT 523
Query 426 -TG-C-G--------T---TA-G----TTCAGTTCGAGTCTGGTCTCATTTCTCATACTA 466
|| | | | || | |||||||||||||||||||||||||||||||||
Sbjct 524 CTGCCGGTTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTA 583
Query 467 GAGACAAGGACATCCTTTTTGGCAAGGAAAATGTTCCTCCTAGAGACAAAGTCACCATAT 526
||||||||| |||| | |||||| | |||||||||||||||||||||||||||||||||
Sbjct 584 GAGACAAGGCCATCATCTTTGGCGACAAAAATGTTCCTCCTAGAGACAAAGTCACCATAT 643
Query 527 TAGGCGATGGAAATGCCAAAGAATCTTTT-AAGAAAGAGGAAGATATTGCTGCTTACACG 585
||||||||||||||||||||| | | | || |||||||||||| |||| ||||||| |
Sbjct 644 TAGGCGATGGAAATGCCAAAGT-TGTGATCAACAAAGAGGAAGATGTTGCAGCTTACATG 702
Query 586 ATCA-GGACAGTGGATGATCCAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTAA 644
|||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATCAAGG-CGGTGGATGATCTAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTAA 761
Query 645 CAACACTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTGT 704
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 762 CAACATTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTCT 821
Query 705 TGAGAAGACTCACATATCAGAAGAACAAATCCTTAAAAGCATCCAAGT 752
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 822 TGAGAAGACTCACATATCAGAAGAGCAAATCCTTAAAAGCATCCAAGT 869
Score = 122 bits (66), Expect = 4e-27
Identities = 75/79 (95%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 769 GTT-GGTGAGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTA 827
||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 948 GTTCGGTGAAGAAGCCTCTGTGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTA 1007
Query 828 TCTCAGTCAATTCATTTGA 846
|||||||||||||| ||||
Sbjct 1008 TCTCAGTCAATTCACTTGA 1026
> AT1G75280.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:28251960-28253619 FORWARD LENGTH=1267
Length=1267
Score = 449 bits (243), Expect = 2e-125
Identities = 331/373 (89%), Gaps = 8/373 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACAT-GGGAGAATT 59
||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 71 ATGGCGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTTACATCGGGA-AATT 129
Query 60 CATCGTTGAAGGGAGCGCGAAAGCTAGTAAC-CCAACATTCGCTCTTGTCCGAGAAGCAT 118
| | || |||| |||||| |||||| | || || ||||||||||| || ||||||||
Sbjct 130 CCTAGTAGAAGCGAGCGCCAAAGCTGGCCACTCC-ACATTCGCTCTCGTTAGAGAAGCAA 188
Query 119 CTCTCTCCGATCCTGTCAAGAGG-AAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACA 177
|||| ||||||||||||||| || |||||| |||||||||||||||||||||| ||||||
Sbjct 189 CTCTATCCGATCCTGTCAAG-GGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCACA 247
Query 178 ATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGAT 237
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 248 ATACTACACGGAGATTTGAATGATCACGAGAGCTTAGTGAAGGCTATTAAACAGGTTGAT 307
Query 238 GTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTGGATCAAACCAAGATCATTTCCGC 296
||||||||||| ||| | ||| | || |||||||||||||||||||||||||||||||||
Sbjct 308 GTGGTGATATCTACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCCGC 366
Query 297 CATTAAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGA 356
||| |||||||||||||| |||| ||||||||||||| ||||||||||| || |||||
Sbjct 367 CATCAAAGAAGCCGGTAATGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGTGGATGTGGA 426
Query 357 GAGAACAAGTGCG 369
|| || ||||||
Sbjct 427 TAGGACGAGTGCG 439
Score = 309 bits (167), Expect = 3e-83
Identities = 227/255 (89%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 501 TCCTCCTAGAGACAAAGTCACCA-TATTAGGCGATGGAAATGCCAAAGAATCT-TTTAAG 558
||||||||||||||||||||||| | || ||||||||||||||||||| | | | ||
Sbjct 589 TCCTCCTAGAGACAAAGTCACCATTCTT-GGCGATGGAAATGCCAAAG-CTGTGATCAAC 646
Query 559 AAAGAGGAAGATATTGCTGCTTACACGATCA-GGACAGTGGATGATCCAAGGACTCTGAA 617
||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct 647 AAAGAGGAAGATATTGCTGCTTACACGATCAAGG-CGGTGGATGATCCTAGGACTCTGAA 705
Query 618 CAAAACCCTCTACATTA-GTCCTCCTAACAACACTTTATCGATGAACGAAATGGTCACCT 676
||||| ||| ||||||| | ||| |||||||||||||||||||||||||||| |||||||
Sbjct 706 CAAAATCCTATACATTAAG-CCTTCTAACAACACTTTATCGATGAACGAAATAGTCACCT 764
Query 677 TGTGGGAGAAAAAGATCGGCAAGTCTGTTGAGAAGACTCACATATCAGAAGAACAAATCC 736
|||||||||||||||| ||||||||| |||||||||||||| | |||| |||||| | |
Sbjct 765 TGTGGGAGAAAAAGATTGGCAAGTCTCTTGAGAAGACTCACCTCCCAGAGGAACAACTAC 824
Query 737 TTAAAAGCATCCAAG 751
|||||||||||||||
Sbjct 825 TTAAAAGCATCCAAG 839
Score = 99.0 bits (53), Expect = 7e-20
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 770 TTGGTGAGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATC 829
|||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 927 TTGGTGTGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACAAGTGTTGACGAGTATC 986
Query 830 TCAGT 834
|||||
Sbjct 987 TCAGT 991
> AT1G75290.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:28253890-28255173 FORWARD LENGTH=957
Length=957
Score = 361 bits (195), Expect = 8e-99
Identities = 316/374 (84%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACATGGGAGAATTC 60
|||||| | |||||| |||||||||||||||||||||| |||||| |||| ||| || ||
Sbjct 1 ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTC 60
Query 61 ATCGTTGAAGGGAGCGCGAAAGCTAGTA-AC-CCAACATTCGCTCTTGTCCGAGAAGCAT 118
|| | |||| ||||| |||||| | | || || ||| | ||||| || ||||||| |
Sbjct 61 ATTATAGAAGCGAGCGTGAAAGC-CGGACACTCC-ACACTGGCTCTCGTTAGAGAAGCCT 118
Query 119 CTCTCTCCGATCCTGTCAAGAGG-AAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACA 177
| ||||||||||| |||| || |||||| |||||| |||||||||| | || ||||||
Sbjct 119 CGCTCTCCGATCCCAACAAG-GGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACA 177
Query 178 ATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGAT 237
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 178 TTACTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGAT 237
Query 238 GTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTGGATCAAACCAAGATCATTTCCGC 296
||||| ||||||||| | ||| | || |||||||||||||||||||||||||||||| ||
Sbjct 238 GTGGTTATATCAACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGC 296
Query 297 CATTAAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGA 356
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 297 TATTAAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGA 356
Query 357 GA-GAACAAGTGCG 369
| | ||||||||
Sbjct 357 CAAGT-CAAGTGCG 369
Score = 303 bits (164), Expect = 1e-81
Identities = 224/253 (89%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 501 TCCTCCTAGAGACAAAGTCACCATATTAGGCGATGGAAATGCCAAAGAATCT-TTTAAGA 559
|||||||||||| ||||||| || || || |||||||||| ||||| | | | || |
Sbjct 519 TCCTCCTAGAGATAAAGTCAAAATTTTCGGAGATGGAAATGTCAAAG-CTGTGATCAACA 577
Query 560 AAGAGGAAGATATTGCTGCTTACACGATC-AGGACAGTGGATGATCCAAGGACTCTGAAC 618
| ||||||||||||||||||||||| ||| | | | |||||||||||||||||||||||
Sbjct 578 AGGAGGAAGATATTGCTGCTTACACTATCAAAG-CGGTGGATGATCCAAGGACTCTGAAT 636
Query 619 AAAACCCTCTACATTAGTCCTCCTAACAACACTTTATCGATGAACGAAATGGTCACCTTG 678
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 637 AAAACCCTCTACATTAATCCTCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTG 696
Query 679 TGGGAGAAAAAGATCGGCAAGTCTGTTGAGAAGACTCACATATCAGAAGAACAAATCCTT 738
|||||||||||||| ||||||||||||||||||| | |||| ||||| ||||||||| ||
Sbjct 697 TGGGAGAAAAAGATTGGCAAGTCTGTTGAGAAGATTTACATGTCAGAGGAACAAATCTTT 756
Query 739 AAAAGCATCCAAG 751
|||||||||||||
Sbjct 757 AAAAGCATCCAAG 769
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 778 GAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATCTCAGT 834
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 868 GAAGCCTCTGAGCTTTACCCTGATATCAAGTACACGAGTATTGATGAGTATCTCAGT 924
> AT1G75295.1 | Symbols: | other RNA | chr1:28255327-28257139
REVERSE LENGTH=1327
Length=1327
Score = 296 bits (160), Expect = 2e-79
Identities = 178/187 (95%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACATGGGAGAATTC 60
||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1102 ATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGGAGAATTC 1043
Query 61 ATCGTTGAAGGGAGCGCGAAAGCTAGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1042 ATCGTTGAAGGGAGCGCGAAAGCCGGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 983
Query 121 CTCTCCGATCCTGTCAAGAGGAAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACAATA 180
||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 982 CTCTCTGATCCTGTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCACAATA 923
Query 181 CTACACG 187
|||||||
Sbjct 922 CTACACG 916
Score = 270 bits (146), Expect = 1e-71
Identities = 161/168 (96%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 585 GATC-AGGACAGTGGATGATCCAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTA 643
|||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 416 GATCAAGG-CGGTGGATGATCTAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTA 358
Query 644 ACAACACTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTG 703
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACAACATTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTC 298
Query 704 TTGAGAAGACTCACATATCAGAAGAACAAATCCTTAAAAGCATCCAAG 751
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 TTGAGAAGACTCACATATCAGAAGAGCAAATCCTTAAAAGCATCCAAG 250
Score = 231 bits (125), Expect = 6e-60
Identities = 133/137 (97%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 183 ACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGATGTGGT 242
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 845 ACAGGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTGATGTGGT 786
Query 243 GATATCAACCATCGGGCACAAGCAAATCTTGGATCAAACCAAGATCATTTCCGCCATTAA 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 GATATCAACCATCGGGCACAAGCAAATCTTTGATCAAACCAAGATCATTTCCGCCATTAA 726
Query 303 AGAAGCCGGTAACGTCA 319
|||||| ||||||||||
Sbjct 725 AGAAGCTGGTAACGTCA 709
Score = 111 bits (60), Expect = 8e-24
Identities = 130/159 (82%), Gaps = 23/159 (14%)
Strand=Plus/Minus
Query 370 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGC- 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCT 518
Query 429 --G----TT---A---G--T---T--C---AGTTCGAGTCTGGTCTCATTTCTCATACTA 466
| || | | | | | ||||||||||||||||||||||||||||||
Sbjct 517 CTGCCGGTTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTA 458
Query 467 GAGACAAGGACATCCTTTTTGGCAAGGAAAATGTTCCTC 505
||||||||| |||| | |||||| | ||||||||||||
Sbjct 457 GAGACAAGGCCATCATCTTTGGCGACAAAAATGTTCCTC 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5