BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316470 Length=291 Score E Sequences producing significant alignments: (Bits) Value AT1G75394.1 | Symbols: | Pseudogene of AT2G31305 | chr1:282947... 207 3e-53 AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351... 174 3e-43 > AT1G75394.1 | Symbols: | Pseudogene of AT2G31305 | chr1:28294786-28295097 FORWARD LENGTH=312 Length=312 Score = 207 bits (112), Expect = 3e-53 Identities = 153/171 (89%), Gaps = 10/171 (6%) Strand=Plus/Plus Query 121 TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT 207 Query 181 GAGGATGACAGCgaagaagaagaagaagaagaagaTAACCACCATCACCATCACCATGAA 240 ||||||||||| ||||||||||| || || || ||| |||||||||||||||| Sbjct 208 GAGGATGACAGTGAAGAAGAAGAT-AACAACAA-----CCA---TCACCATCACCATGAA 258 Query 241 CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA 291 |||||||||||| ||||||| || |||||||||||||||||| ||| |||| Sbjct 259 CACTCCGAATCTTGTGAGGCATCTTCTTCTAACGATTCTAAA-GCATTTGA 308 Score = 141 bits (76), Expect = 3e-33 Identities = 117/135 (87%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 1 ATGAGCACAGCGACCAGGCCTTCGTCTTCAGCGACAACCTCTGTCATCTTAGAAAACCCT 60 |||||||| ||||| ||||||||||||||| |||| | | ||||| |||||| ||| Sbjct 1 ATGAGCACTGCGACTAGGCCTTCGTCTTCATCGACTA---C---CATCTGAGAAAATCCT 54 Query 61 GTTTCTCAATCACAGCCAACAGAGAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA 120 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 55 GTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA 114 Query 121 -TTT-ATGCAGAAGA 133 ||| ||| | |||| Sbjct 115 GTTTCATGGA-AAGA 128 > AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351464 FORWARD LENGTH=643 Length=643 Score = 174 bits (94), Expect = 3e-43 Identities = 146/171 (85%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 121 TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT 180 |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 241 TTTATGCAGAAGAAGAGTTCGAAGAAGTGTTGCATCTTTCATAAACAGAAGCCTTTTGAT 300 Query 181 GAGGATGACAGCgaagaagaagaagaagaagaagaTAACCACCATCACCATCACCATGAA 240 ||||||||||| ||||||||||| | | || | | | ||| | | ||| |||||||| Sbjct 301 GAGGATGACAGTGAAGAAGAAGATG-ATAA-CA-ACCATCACTGTGATCATAACCATGAA 357 Query 241 CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA 291 |||||||||||||||||||| || |||||||| ||||||||| || ||||| Sbjct 358 CACTCCGAATCTGGTGAGGCATCTTCTTCTAATGATTCTAAA-GCCGTTGA 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13421488983 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5