BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316470

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75394.1 | Symbols:  | Pseudogene of AT2G31305 | chr1:282947...   207    3e-53
  AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351...   174    3e-43


> AT1G75394.1 | Symbols:  | Pseudogene of AT2G31305 | chr1:28294786-28295097 
FORWARD LENGTH=312
Length=312

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 153/171 (89%), Gaps = 10/171 (6%)
 Strand=Plus/Plus

Query  121  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  207

Query  181  GAGGATGACAGCgaagaagaagaagaagaagaagaTAACCACCATCACCATCACCATGAA  240
            ||||||||||| |||||||||||  || || ||     |||   ||||||||||||||||
Sbjct  208  GAGGATGACAGTGAAGAAGAAGAT-AACAACAA-----CCA---TCACCATCACCATGAA  258

Query  241  CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA  291
            |||||||||||| ||||||| || |||||||||||||||||| ||| ||||
Sbjct  259  CACTCCGAATCTTGTGAGGCATCTTCTTCTAACGATTCTAAA-GCATTTGA  308


 Score =  141 bits (76),  Expect = 3e-33
 Identities = 117/135 (87%), Gaps = 9/135 (7%)
 Strand=Plus/Plus

Query  1    ATGAGCACAGCGACCAGGCCTTCGTCTTCAGCGACAACCTCTGTCATCTTAGAAAACCCT  60
            |||||||| ||||| ||||||||||||||| |||| |   |   ||||| |||||| |||
Sbjct  1    ATGAGCACTGCGACTAGGCCTTCGTCTTCATCGACTA---C---CATCTGAGAAAATCCT  54

Query  61   GTTTCTCAATCACAGCCAACAGAGAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA  120
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  55   GTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA  114

Query  121  -TTT-ATGCAGAAGA  133
             ||| ||| | ||||
Sbjct  115  GTTTCATGGA-AAGA  128


> AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351464 
FORWARD LENGTH=643
Length=643

 Score =  174 bits (94),  Expect = 3e-43
 Identities = 146/171 (85%), Gaps = 4/171 (2%)
 Strand=Plus/Plus

Query  121  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  180
            |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct  241  TTTATGCAGAAGAAGAGTTCGAAGAAGTGTTGCATCTTTCATAAACAGAAGCCTTTTGAT  300

Query  181  GAGGATGACAGCgaagaagaagaagaagaagaagaTAACCACCATCACCATCACCATGAA  240
            ||||||||||| ||||||||||| | | ||  | |  | |||  | | ||| ||||||||
Sbjct  301  GAGGATGACAGTGAAGAAGAAGATG-ATAA-CA-ACCATCACTGTGATCATAACCATGAA  357

Query  241  CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA  291
            |||||||||||||||||||| || |||||||| ||||||||| || |||||
Sbjct  358  CACTCCGAATCTGGTGAGGCATCTTCTTCTAATGATTCTAAA-GCCGTTGA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5