BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316473
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75420.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2041 0.0
> AT1G75420.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:28305297-28307503 FORWARD LENGTH=1750
Length=1750
Score = 2041 bits (1105), Expect = 0.0
Identities = 1296/1387 (93%), Gaps = 17/1387 (1%)
Strand=Plus/Plus
Query 7 AAAGCGTCGACGATGCAAAAGAAGAGATGGGCACTAATGGTTTTGTTGTTTCTATCTGTA 66
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 AAAGCGTCGACGATGCAAAGGAAGAGATGGGCACTGATGGTTTTGTTGTTTCTATCTGTA 238
Query 67 TCAACAGTTTGTGTGATTCTCGTGAGATCTAGTTTTGAATCCTGTAGCGTTGGTGGCCAA 126
|||||||| ||| ||||||||||||||||||| |||||| |||||||| || || |||||
Sbjct 239 TCAACAGTGTGTATGATTCTCGTGAGATCTAGCTTTGAAACCTGTAGCATTAGTAGCCAA 298
Query 127 TTCGT----G----G-AT-----AA-CAGCGCCTTGAAGTTTCAATCGAATCCTCTAGCT 171
||||| | | || || ||||||| ||||||||||||||||||||||| |
Sbjct 299 TTCGTGGAAGAAAAGAATGGAGAAAGCAGCGCCGCGAAGTTTCAATCGAATCCTCTAGAT 358
Query 172 TTCATGAAATCGAAACTCGTTTTGTTAGTCTCCCACGAGCTATCACTCTCAGGAGGACCT 231
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 359 TTCATGAAATCGAAGCTCGTTTTGTTAGTATCCCACGAGCTATCACTCTCAGGTGGACCT 418
Query 232 CTGCTCTTAATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGAAGTTGTTTGGATC 291
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 TTGCTATTGATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGACGTTGTTTGGATC 478
Query 292 ACTAATCAGAAA-CCACTTGAAGAAGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 350
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 ACTAATCA-AAAGCCACTTGAAGATGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 537
Query 351 AGACCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 410
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 597
Query 411 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTGGATGCTGTTCTCAA 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 598 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTTGATGCTGTTCTAAA 657
Query 471 GGAAAATGTTGTTAAAGTTCTACCTAAGATCCTTTGGTGGATTCATGAGATGAGAGGACA 530
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 AGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGATTCATGAGATGAGAGGACA 717
Query 531 TTATTTTAATCCGGATTTGGTCAAACACCTCCCGTTTGTTGCAGGGGCTATGATTGATTC 590
||||| ||| | |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 718 CTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTGCAGGGGCCATGATTGATTC 777
Query 591 GCATGCAACGGCCGAATACTGGAAAAACAGAACTCAAGCTCGCTTAGGGATTAAGATGCC 650
||||||||| || | |||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 778 GCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTCGCCTAGGGATTAAAATGCC 837
Query 651 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGATTTGATGGAAGTAGCTGAAGATAG 710
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGATGGAAGTAGCTGAAGATAG 897
Query 711 TGTTGCCAAGAGAGTTCTCCGTGAGCACATCCGAGAATCTCTTGGAGTGCGGAATGAAGA 770
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 TGTTGCCAAGAGAGTTCTCCGTGAGCACGTCCGAGAATCTCTTGGAGTGCGGAATGAAGA 957
Query 771 CTTACTGTTTGGCATTATCAATAGTGTATCGCGCGGAAAAGGGCAGGACCTGTTCCTCAG 830
|||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
Sbjct 958 CTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAAAGGCCAGGATCTGTTCCTCCG 1017
Query 831 AGCCTTCCACGAAAGTCTTGAAATAATCAGAGAGAAGAAACTTCAGGTACCAACAATGCA 890
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1018 AGCCTTCCACGAAAGTCTTGAAAGAATCAAAGAGAAGAAACTTCAGGTACCAACAATGCA 1077
Query 891 TGCAGTAGTAGTAGGAAGTGACATGAGCCGGCAGACAAAGTTCGAGACAGAACTACGCAA 950
|||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1078 TGCAGTAGTAGTAGGAAGCGACATGAGCAAGCAGACAAAGTTCGAGACAGAGCTACGCAA 1137
Query 951 CTTTGTCCTAGaaaaaaaaCTTGAGAACTTTATCCACTTTGTCAACAAAACTCTAAGCGT 1010
|||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct 1138 CTTTGTCCGAGAAAAGAAACTTGAGAACTTTGTCCACTTCGTCAACAAAACTCTAACCGT 1197
Query 1011 AGCGCCATATATAGCAGCCATAGACGTTCTTGTCCAGAACTCCCAAGCCAGAGGAGAGTG 1070
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1198 AGCACCATATATAGCAGCCATAGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATG 1257
Query 1071 CTTTGGGAGAATAACAATCGAGGCCATGGCCTTTAAGCTACCTGTACTTGGCACTGCAGC 1130
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1258 CTTTGGGAGAATAACAATCGAAGCCATGGCCTTTAAGCTACCTGTACTTGGTACTGCAGC 1317
Query 1131 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACCGGTCTGTTACATAGTGCAGGGAA 1190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACTGGTCTGTTACATAGTGCAGGGAA 1377
Query 1191 AGAAGGAGTGATACCTCTCGCTAAGAACATAGTGAAATTGGCAATGCAAGTTGAGTTACG 1250
||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct 1378 AGAAGGAGTGATACCTCTCGCCAAGAACATAGTGAAGTTGGCGACGCAAGTTGAGTTACG 1437
Query 1251 GCTAACAATGGGAAACAATGGTTATGAGAGGGTAAAGGAGATGTTTTTGGAACATCATAT 1310
||| | ||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1438 GCTGAGAATGGGAAAAAATGGGTATGAGAGAGTAAAAGAGATGTTTTTGGAACATCATAT 1497
Query 1311 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCCCGTGCTTT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1498 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCTCGTGCTTT 1557
Query 1371 ACGATGA 1377
|||||||
Sbjct 1558 ACGATGA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5