BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316480
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75470.1 | Symbols: ATPUP15, PUP15 | purine permease 15 | ch... 1554 0.0
> AT1G75470.1 | Symbols: ATPUP15, PUP15 | purine permease 15 |
chr1:28330072-28331300 FORWARD LENGTH=1146
Length=1146
Score = 1554 bits (841), Expect = 0.0
Identities = 1051/1151 (91%), Gaps = 20/1151 (2%)
Strand=Plus/Plus
Query 24 GTCCAATCCACAAGAACAATTTGTGCAAATA-CCACTCAATATCGAGCACCGCCTAACCA 82
||| |||||||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct 9 GTCAAATCCACAAGAACACTTTGTGCAAATAGCC-CTGGATATCGAGCACCGCCTAACCA 67
Query 83 CACCGATCAGCTTAACCAGTGAATCGAATCAGAGACGTAACAAGTGGGTTACTATCATCA 142
||||||||||| |||| ||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 68 CACCGATCAGCCTAACAAGTGACTCGAATCAGAGACGTAACCAGTGGGTTACCATCATCA 127
Query 143 TATGCACCATCTTGGCCGTAACAGGGCAATGCGTCGCTAGACTCCTCGAGAACTATTACT 202
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 128 TATGCACCATCTTGGCCGTAACAGGTCAATGCATCGCTAGACTCCTCGAGAACTATTACT 187
Query 203 TCCTCCACAGAAACCGGAGCCGCCGCCGCGGTATCTTGACTCAACCACTTCTCCAGGTCG 262
||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 188 TCCTCCACAAAAACCTGAGCCGCCGCCGCGGTATCTTGACTCAAACACTTCTCCAAGTCG 247
Query 263 TCGGATTCCCCATCCT-CATCTTCCCTTTCCTTCTCCACTTCCTCATCAAGAAACAGAAA 321
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCGGATTCCCCATCCTCCTTC-TCCCTTTCCTTCTCCACTTCCTCATCAAGAAACAGAAA 306
Query 322 CAACTTCTCATTTTCTCCGGTGGAACCTCCTTCAAGCAATTAGCCATAACTTACTCT-TG 380
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
Sbjct 307 CAACTTCTCATTTTCTCCGGTGAAACCTCCCTCAAGCACTTAGCCATAACTTACTCTAT- 365
Query 381 TCTCTGCATCTACATGTTTTGTCAAGCATTTTTCTTCAACGTTAGAAACCAGATACCCTT 440
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 366 TCTCTGCATCTACATGTTTTGTCAAGCATTTTTCTCCGACGTTAGAAACCAGATACCCTA 425
Query 441 TAGAGTTTTCACTCTCATCT-ACACGACGCAGCTCTTATTCACCCTGATTTTATCCACGT 499
||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||| ||
Sbjct 426 TAGAGTTTTCACTCTCA-CTTACACGACGCAGCTATTATTCACCCTGATTTTCTCCAAGT 484
Query 500 GTTACAACAAAATCAAATTCAATAGATGGATGATTATCTCTCTCATCTTAGCCGTCCTCG 559
||||||| | |||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 485 ATTACAACGATATCAAATTTAATAGATGGACGTTTATCTCTCTCATCTTAGCCGTCCTCG 544
Query 560 CTGGCGCTTTCACTCTCTACACTTTCTCCGCCGGGTCACCCATCTACGACAGCTGGACGA 619
| |||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 545 CCGGCGCTTTCACTCTCTACACTTTCTCCGCCGGGTCACCCATCTACG---G--GAA-GA 598
Query 620 AATCCAACAAATGGGGAACTATCTA-TGTGGCTTTATGCGCTGCCGCCTTTTTCTCCTTC 678
||||| || | |||| ||| || ||||||||| |||||||| ||||||||||||
Sbjct 599 AATCCTACGGCTATGGAATTAT-TAATGTGGCTTTCGGCGCTGCCATCTTTTTCTCCTTG 657
Query 679 CTCCTCTGCGTTATCAGGCAGGTATTCGAGGAAGTTATCTCTATT-TGCAACACATCCAC 737
||||||||| |||||||| |||| ||||||||| |||||||| || ||||||||||||||
Sbjct 658 CTCCTCTGCATTATCAGGAAGGTGTTCGAGGAACTTATCTCT-TTCTGCAACACATCCAC 716
Query 738 CAACAGAAAACGACCCAGTTTCGTCGTCGTTCTTGAGTTGATCATCTTCTTGTCTCTCGT 797
||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 717 CAACAGAAAACAACCCAGTTTCGTTGTCGTTCTCGAGATGATCATCTTCTTGTCTCTCGT 776
Query 798 CGTCACCATCATCTTAGTAGCAGCCATTCTCATCTCCGGTGAACATCACAATATGAAGAA 857
||| |||||||||||||| |||||| || | ||||| |||||||||||| ||||||||||
Sbjct 777 CGTAACCATCATCTTAGTCGCAGCCGTTTTAATCTCTGGTGAACATCACGATATGAAGAA 836
Query 858 AGAGATGGATAGGTTCACGAAGGGAGAGATTGCCTACGTGAGGACTATGGTAGGTCAAGC 917
||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 837 AGAGATGGAAACGTTCACGAAGGGAGATATTGCCTACGTGAGGACTATGGTGGGTCAAGC 896
Query 918 CGTTGCATGGCAGATATACTGGGTCGGGATCGTGGGGCTCGCGTTCGCTGTCTCGGCCGT 977
||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 897 CGTTGCATGGCAGATCTACTGGGTCGGGATCGTGGGGCTAGTGTTCGCTGTCTCCGCCGT 956
Query 978 GTTCTCGAACGTGATCAGCGTCTGTACGTGGCCGATCGTGTCGCTTCTCGTGGTTTGTTT 1037
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct 957 GTTCTCGAACGTGATCAGTGTCTGTACGTGGCCGATCGTGTCGCTTCTAGTGGCTT-TTT 1015
Query 1038 T-TATGACAAGTACGATCATTTCGATGTCTTCAGAGGAATCGCCTTAGGCGCCGCTGCTC 1096
| ||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 TATATAACACGCACGATCATTTCGATGTCTTCAGAGGAATCGCCTTAGGCGCAGCTGCTC 1075
Query 1097 TTAGCGTCGCCTGTTATATCTATATAATCCACAAAGAGAAGAGCGACGGTGATGACCAAT 1156
|||||||| | |||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 1076 TTAGCGTCTCGTGTTATATCTATATTATTCACAAAGAGAAGAGCGACGATGATGACCAAT 1135
Query 1157 CCACAAGCTAA 1167
|||||||||||
Sbjct 1136 CCACAAGCTAA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5