BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316489
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28... 573 7e-163
AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:45... 568 3e-161
AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:34... 359 2e-98
AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to ... 281 5e-75
> AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28390665-28391493
FORWARD LENGTH=531
Length=531
Score = 573 bits (310), Expect = 7e-163
Identities = 352/373 (94%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAGCTCCGAGGAAGCTG 60
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 89 ATGGCTCGTACGAAGCAAACTGCAAGAAAATCACACGGAGGAAAAGCTCCGAGGACTCTG 148
Query 61 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCAC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 149 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGGAGTCAAGAAACCTCAC 208
Query 121 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 268
Query 181 TTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 269 TTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAGATTACAAG 328
Query 241 ACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATAT 300
||||||||||||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct 329 ACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTGAAGCATAT 388
Query 301 TTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATT 360
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 389 TTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGGTTACGATC 448
Query 361 ATGCCTAAAGATG 373
|||||||||||||
Sbjct 449 ATGCCTAAAGATG 461
Score = 527 bits (285), Expect = 6e-149
Identities = 321/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 161 GCGGCGAGGAAATCTGCGCCGACTACTGGAGGAGTCAAGAAACCTCACCGTTACCGTCCC 220
Query 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 280
Query 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 281 AAACTTCCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAGATTACAAGACGGATCTGAGA 340
Query 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
||||| ||||| || ||||| || |||||||||||||| || ||||||||||| ||||||
Sbjct 341 TTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTTGGTTTG 400
Query 613 TTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGAT 672
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 401 TTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGGTTACGATCATGCCTAAAGAT 460
Query 673 GTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTAG 711
||||||||||||||||| |||||||||||||||||||||
Sbjct 461 GTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 499
> AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:4587780-4588613
REVERSE LENGTH=648
Length=648
Score = 568 bits (307), Expect = 3e-161
Identities = 351/373 (94%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAGCTCCGAGGAAGCTG 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 92 ATGGCTCGTACGAAGCAATCCGCGAGAAAATCACACGGAGGAAAAGCTCCGACGAAGCAG 151
Query 61 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCAC 120
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 152 CTCGCTACCAAGGCGGCAAGGAAATCTGCACCGACTACCGGAGGAGTCAAGAAACCTCAC 211
Query 121 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 180
|||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 212 CGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGAGCACAGAG 271
Query 181 TTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 240
||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 272 TTGTTGAACCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAG 331
Query 241 ACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATAT 300
||||||||||||||||||||||| || || || || ||||||||||||||||||||||||
Sbjct 332 ACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCGGAGGCATAT 391
Query 301 TTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATT 360
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 392 TTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGCAAAGAGGGTTACCATT 451
Query 361 ATGCCTAAAGATG 373
|||||||||||||
Sbjct 452 ATGCCTAAAGATG 464
Score = 516 bits (279), Expect = 1e-145
Identities = 319/339 (94%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 164 GCGGCAAGGAAATCTGCACCGACTACCGGAGGAGTCAAGAAACCTCACCGTTTCCGTCCT 223
Query 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 224 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGAGCACAGAGTTGTTGAACCGT 283
Query 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 284 AAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAGACGGATCTGAGA 343
Query 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
||||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 344 TTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCGGAGGCATATTTGGTTGGTTTG 403
Query 613 TTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGAT 672
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 404 TTTGAAGACACAAATCTCTGTGCCATTCATGCAAAGAGGGTTACCATTATGCCTAAAGAT 463
Query 673 GTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTAG 711
||||||||||||||||| ||||||| |||||||||||||
Sbjct 464 GTTCAATTGGCAAGAAGGATTCGTGCAGAGCGTGCTTAG 502
> AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:3472405-3473466
REVERSE LENGTH=714
Length=714
Score = 359 bits (194), Expect = 2e-98
Identities = 312/370 (84%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCCGAGGAAGCT 59
||||||||||| ||||||||||| || |||| ||| |||||| |||||||| |||||||
Sbjct 118 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCCCAGGAAGCA 176
Query 60 GCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCA 119
||| || |||||||||||||||||||| || || || || ||||||||||||||||||||
Sbjct 177 GCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCA 236
Query 120 CCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGA 179
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 237 CCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGTACTGA 296
Query 180 GTTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAA 239
||||||||||| || |||||||| || ||||| ||||| ||||| || || || |||||
Sbjct 297 ATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAA 356
Query 240 GACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATA 299
|||||||||||| || || || ||||| || || || |||||||| || || ||||||||
Sbjct 357 GACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATA 416
Query 300 TTTGGTGGGTTTGTTT-GAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 358
| || || | ||| || || || ||||| || || ||||| || |||||||||||||
Sbjct 417 CCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGGTTACGA 475
Query 359 TTATGCCTAA 368
| ||||||||
Sbjct 476 TCATGCCTAA 485
Score = 337 bits (182), Expect = 1e-91
Identities = 287/339 (85%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
|||||||||||||| || || || ||||| |||||||||||||||||||||||||||||
Sbjct 190 GCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCA 249
Query 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct 250 GGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGTACTGAATTGTTGATCCGC 309
Query 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
|| |||||||| || ||||| ||||| ||||| || || || |||||||||||||||||
Sbjct 310 AAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAAGACGGATCTGAGG 369
Query 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
|| || || ||||| ||||| || |||||||| || || |||||||| | || || |
Sbjct 370 TTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTAGTTGGACT- 428
Query 613 TTT-GAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGA 671
||| || || || ||||| || || ||||| || |||||||||||||| |||||||| ||
Sbjct 429 TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGA 488
Query 672 TGTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTA 710
|||||||||| ||||||||||||||||| ||||||||
Sbjct 489 CATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTTA 527
> AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to
histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone
H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula
ruralis GI:4574208; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54
P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425)
corresponds to a region of the predicted gene.~Similar
to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
| chr1:28392729-28393312 FORWARD LENGTH=584
Length=584
Score = 281 bits (152), Expect = 5e-75
Identities = 166/173 (96%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 539 AGACGGATCTGAGATTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCAT 598
||||||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||
Sbjct 412 AGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCGGAGGCAT 471
Query 599 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 531
Query 659 TTATGCCTAAAGATGTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTAG 711
| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 532 TAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 584
Score = 211 bits (114), Expect = 7e-54
Identities = 128/135 (95%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 239 AGACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCAT 298
||||||||||||||||||| ||||| || || || || ||||||||||||||||||||||
Sbjct 412 AGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCGGAGGCAT 471
Query 299 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 531
Query 359 TTATGCCTAAAGATG 373
| |||||||||||||
Sbjct 532 TAATGCCTAAAGATG 546
Score = 165 bits (89), Expect = 5e-40
Identities = 91/92 (99%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 149 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCCTTTCAAC 208
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 223 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAAC 282
Query 209 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 240
||||||||||||||||||||||||||||||||
Sbjct 283 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 314
Score = 165 bits (89), Expect = 5e-40
Identities = 91/92 (99%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 449 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCCTTTCAAC 508
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 223 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAAC 282
Query 509 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 540
||||||||||||||||||||||||||||||||
Sbjct 283 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 314
Score = 134 bits (72), Expect = 1e-30
Identities = 89/97 (92%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 364 CCTAA-AGATGCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCG 422
||||| | | |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 54 CCTAACATAGGCGGCGAGGAAATCTGCGCCAACTACCGGTGGAGTCAAGAAACCTCACCG 113
Query 423 TTACCGTCCCGGAACCGTCGCTCTTCG-TGAGATTCG 458
||||||||||||||||||||||||||| | || ||||
Sbjct 114 TTACCGTCCCGGAACCGTCGCTCTTCGGTAAGTTTCG 150
Score = 126 bits (68), Expect = 3e-28
Identities = 87/96 (91%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 65 CTACCA-AGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCACCGT 123
||| || |||||||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 55 CTAACATAGGCGGCGAGGAAATCTGCGCCAACTACCGGTGGAGTCAAGAAACCTCACCGT 114
Query 124 TACCGTCCCGGAACCGTCGCTCTTCG-TGAGATTCG 158
|||||||||||||||||||||||||| | || ||||
Sbjct 115 TACCGTCCCGGAACCGTCGCTCTTCGGTAAGTTTCG 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5