BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316494
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75670.1 | Symbols: | DNA-directed RNA polymerases | chr1:2... 942 0.0
> AT1G75670.1 | Symbols: | DNA-directed RNA polymerases | chr1:28415204-28416627
REVERSE LENGTH=887
Length=887
Score = 942 bits (510), Expect = 0.0
Identities = 566/593 (95%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGGTTAAAGCTATCAGAAGCGGAATTGATGATTTATATTCATCCTTCGAAGAGC 60
|||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 123 ATGGAGGGATTAAAGCTCTCAGAAGCGGAATTGATGATTTTTATTCATCCTTCCCAGAGC 182
Query 61 AGAAACGTTTTTC-AGGCGATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 119
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGAAACGTTTTTCAAGG-AATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 241
Query 120 AACCTTCGATGGTGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 179
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AACCTTTGATGGAGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 301
Query 180 CCTTGCGGGACTTCATCCTTACTTTGGCGTTAGAGTTAACACTAGACTACTCCTT-TTTG 238
|||| | ||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 302 CCTTACAGGACTTCATCCTTACTTTGGCGTCAGAGTTAACACTAGACTACTC-TTATTTG 360
Query 239 ATCCTAAGCCCAAAAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAGTCC 298
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ATCCTAAGCCCAAGAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAATCC 420
Query 299 ATGTTATTGTTCTTGGTTTTTCTGCTGCAGTCATTACAGACGTTGATATCCGGGAAGAGT 358
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 421 ATGTTATTGTTCTTGGTTTCTCTGCTGCTGTCATTACAGACGTTGATATCCGGGAAGAGT 480
Query 359 TCAAGTACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGACATG 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TCAAATACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGGCATG 540
Query 419 CACTAAAGCTTGGAACAATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTAATGC 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CACTAAAGCTTGGAACTATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTTATGC 600
Query 479 ATATAGCTGGATCTCTACTTCCCGAAAACACAGGATGCGTTAAGTGGCTGGAAAAGAAGT 538
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 601 ATATAGCTGGATCTCTACTTCCGGAAAACACAGGATGCGTTAAGTGGCTCGAAAAGAAGT 660
Query 539 CTGAAGAAGCTTTGCATACGGATAGGGATCATAAAAGGAGGAAAATCGCCTGA 591
||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 661 CTGAAGAAGCTTTGCCTACGGATAGGGATCATAAAAGGAGGAAACTCGCCTGA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5