BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316494 Length=591 Score E Sequences producing significant alignments: (Bits) Value AT1G75670.1 | Symbols: | DNA-directed RNA polymerases | chr1:2... 942 0.0 > AT1G75670.1 | Symbols: | DNA-directed RNA polymerases | chr1:28415204-28416627 REVERSE LENGTH=887 Length=887 Score = 942 bits (510), Expect = 0.0 Identities = 566/593 (95%), Gaps = 4/593 (1%) Strand=Plus/Plus Query 1 ATGGAGGGGTTAAAGCTATCAGAAGCGGAATTGATGATTTATATTCATCCTTCGAAGAGC 60 |||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||| Sbjct 123 ATGGAGGGATTAAAGCTCTCAGAAGCGGAATTGATGATTTTTATTCATCCTTCCCAGAGC 182 Query 61 AGAAACGTTTTTC-AGGCGATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 119 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AGAAACGTTTTTCAAGG-AATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 241 Query 120 AACCTTCGATGGTGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 179 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 AACCTTTGATGGAGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 301 Query 180 CCTTGCGGGACTTCATCCTTACTTTGGCGTTAGAGTTAACACTAGACTACTCCTT-TTTG 238 |||| | ||||||||||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 302 CCTTACAGGACTTCATCCTTACTTTGGCGTCAGAGTTAACACTAGACTACTC-TTATTTG 360 Query 239 ATCCTAAGCCCAAAAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAGTCC 298 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 ATCCTAAGCCCAAGAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAATCC 420 Query 299 ATGTTATTGTTCTTGGTTTTTCTGCTGCAGTCATTACAGACGTTGATATCCGGGAAGAGT 358 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 421 ATGTTATTGTTCTTGGTTTCTCTGCTGCTGTCATTACAGACGTTGATATCCGGGAAGAGT 480 Query 359 TCAAGTACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGACATG 418 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 481 TCAAATACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGGCATG 540 Query 419 CACTAAAGCTTGGAACAATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTAATGC 478 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 541 CACTAAAGCTTGGAACTATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTTATGC 600 Query 479 ATATAGCTGGATCTCTACTTCCCGAAAACACAGGATGCGTTAAGTGGCTGGAAAAGAAGT 538 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 601 ATATAGCTGGATCTCTACTTCCGGAAAACACAGGATGCGTTAAGTGGCTCGAAAAGAAGT 660 Query 539 CTGAAGAAGCTTTGCATACGGATAGGGATCATAAAAGGAGGAAAATCGCCTGA 591 ||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 661 CTGAAGAAGCTTTGCCTACGGATAGGGATCATAAAAGGAGGAAACTCGCCTGA 713 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28432527202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5