BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316499

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75720.1 | Symbols:  | Plant protein of unknown function (DU...   867    0.0  


> AT1G75720.1 | Symbols:  | Plant protein of unknown function (DUF827) 
| chr1:28434648-28435318 REVERSE LENGTH=594
Length=594

 Score =  867 bits (469),  Expect = 0.0
 Identities = 565/609 (93%), Gaps = 15/609 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGACGACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGACAACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA  60

Query  61   GCCGTTGCGTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTTAAG  120
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  61   GCCGTTGCTTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTCAAA  120

Query  121  GTGGCAATGAAGAAACAGATGCAGGATGAGAAATGGGAAGATCCATCAGGGATTGAGAGA  180
            ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct  121  GTGGCAATGAAGATACAGATGCATGATGAGAAATGGGAAGATCCATCAGGGATTAAGATA  180

Query  181  GAGCTTGAAGAGACAAGACATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGA  240
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  GAGCTTCAAGAGACAAGATATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGG  240

Query  241  AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACTAAACAAGAGCTCCAGAAGCTG  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACAAAACAAGAGCTCCAGAAGCTG  300

Query  301  AGAGTTGATCCTGGTGTACCCGAAACGAAACTCGACGAGACTGTTTTCAAAACCAAGTTC  360
            |||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||| 
Sbjct  301  AGAGTTGATCCTGGGGTAAACGAAACGAAACTCGACGAGACTGTTTTTAAAACCAAGTTT  360

Query  361  GAAGTGTTAGTTCCTCGGGATGACGATGAACCAATTAGAAGTCCAAGGTTGAGATCGATG  420
            ||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||
Sbjct  361  GAAGTGTTAGTTCCTCGGGTTGATGATGAGCCAATTAGAAGTCCGAGGTTGAGATCGATG  420

Query  421  AGTGAAAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGTTCCGCGGTGGAG  480
            ||||| ||||||||||||||||||||||||||||||||||||||||| || | | ||   
Sbjct  421  AGTGAGAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGCTC-G-G-TG---  474

Query  481  ATGTTTCTTGAGAGACATCCTTCGATGAAAATgaaggagaagaagaccaagaataataag  540
             | || ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||   |
Sbjct  475  -T-TT-CTTGAGAGACATCCTTCAATGAAAAAGAAGGAGAAGAAGACAAAGGATAA---G  528

Query  541  aagaagaagaagaGTTTGATCCCTTTGTTTATTGGAGGGATTTTTTCAAAGAAAAAGGTT  600
            |||||||||| |  ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  529  AAGAAGAAGA-G--TTTAATCCCTTTGTTTATTGGAGGGATTTTTTCTAAGAAAAAGGTT  585

Query  601  TTGCAATGA  609
            |||||||||
Sbjct  586  TTGCAATGA  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5