BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316499 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT1G75720.1 | Symbols: | Plant protein of unknown function (DU... 867 0.0 > AT1G75720.1 | Symbols: | Plant protein of unknown function (DUF827) | chr1:28434648-28435318 REVERSE LENGTH=594 Length=594 Score = 867 bits (469), Expect = 0.0 Identities = 565/609 (93%), Gaps = 15/609 (2%) Strand=Plus/Plus Query 1 ATGGAGACGACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGACAACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA 60 Query 61 GCCGTTGCGTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTTAAG 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 GCCGTTGCTTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTCAAA 120 Query 121 GTGGCAATGAAGAAACAGATGCAGGATGAGAAATGGGAAGATCCATCAGGGATTGAGAGA 180 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | Sbjct 121 GTGGCAATGAAGATACAGATGCATGATGAGAAATGGGAAGATCCATCAGGGATTAAGATA 180 Query 181 GAGCTTGAAGAGACAAGACATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGA 240 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGCTTCAAGAGACAAGATATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGG 240 Query 241 AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACTAAACAAGAGCTCCAGAAGCTG 300 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACAAAACAAGAGCTCCAGAAGCTG 300 Query 301 AGAGTTGATCCTGGTGTACCCGAAACGAAACTCGACGAGACTGTTTTCAAAACCAAGTTC 360 |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 301 AGAGTTGATCCTGGGGTAAACGAAACGAAACTCGACGAGACTGTTTTTAAAACCAAGTTT 360 Query 361 GAAGTGTTAGTTCCTCGGGATGACGATGAACCAATTAGAAGTCCAAGGTTGAGATCGATG 420 ||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| Sbjct 361 GAAGTGTTAGTTCCTCGGGTTGATGATGAGCCAATTAGAAGTCCGAGGTTGAGATCGATG 420 Query 421 AGTGAAAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGTTCCGCGGTGGAG 480 ||||| ||||||||||||||||||||||||||||||||||||||||| || | | || Sbjct 421 AGTGAGAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGCTC-G-G-TG--- 474 Query 481 ATGTTTCTTGAGAGACATCCTTCGATGAAAATgaaggagaagaagaccaagaataataag 540 | || ||||||||||||||||| ||||||| ||||||||||||||| ||| |||| | Sbjct 475 -T-TT-CTTGAGAGACATCCTTCAATGAAAAAGAAGGAGAAGAAGACAAAGGATAA---G 528 Query 541 aagaagaagaagaGTTTGATCCCTTTGTTTATTGGAGGGATTTTTTCAAAGAAAAAGGTT 600 |||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 529 AAGAAGAAGA-G--TTTAATCCCTTTGTTTATTGGAGGGATTTTTTCTAAGAAAAAGGTT 585 Query 601 TTGCAATGA 609 ||||||||| Sbjct 586 TTGCAATGA 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5