BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316513

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75870.1 | Symbols:  | unknown protein; Has 10 Blast hits to...   676    0.0  


> AT1G75870.1 | Symbols:  | unknown protein; Has 10 Blast hits 
to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:28486229-28487393 FORWARD 
LENGTH=1080
Length=1080

 Score =  676 bits (366),  Expect = 0.0
 Identities = 457/500 (91%), Gaps = 10/500 (2%)
 Strand=Plus/Plus

Query  1    ATGCAAGAACCCCAAACGAAGTTGTCTCTGAGTGTTACACCAGTCAATGGAACTG-----  55
            ||||||||| ||||||||||||||||||||||||| |||||||| |||| || ||     
Sbjct  304  ATGCAAGAAACCCAAACGAAGTTGTCTCTGAGTGTAACACCAGTTAATGCAAATGCCCCA  363

Query  56   -TCCCACAGAATCCCGCGATTCCTCTAGGCTTGATTGCTCCATATCATCAACAAGCAAAT  114
             |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  364  CTCCCACAGAATCCCGCAATTCCTCTAGGCTTGATTGCTCCATATCATCAACAAGCAAAA  423

Query  115  GACATTAACCATATGTTACAGAACCAGATGACAAGAGAATTGTATGGTCAACTAAGGAGT  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  424  GACATTAACCATATGTTACAGAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGT  483

Query  175  CTCGAGGAGAGAGCCGTCTTGTGTGTGAGAGG-AAAAGACAAAATCATCGAAGAAATGAA  233
            ||||||||||||||| |||| |||||||| || |||||||||| |||||||||| |||||
Sbjct  484  CTCGAGGAGAGAGCCATCTTTTGTGTGAG-GGTAAAAGACAAAGTCATCGAAGATATGAA  542

Query  234  GAAACAATGTGGCGAAATGGAGATTCGTACGAGAAAAGCGTTAGCAGAAGCCGAATTTTG  293
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  543  GAAACAATGTGGAGAAATGGAGATTCGTACGAGAAAAGCGTTAGCAGAAGCAGAATTTTG  602

Query  294  GAGGAAGATGACGAATCAGAAAACGGACTTGTGTAAAGAACTTGCCGGGAGGCTCCTGGA  353
            |||||||||||||||| |||||||||||||||||| ||| ||||| ||||| ||  | ||
Sbjct  603  GAGGAAGATGACGAATGAGAAAACGGACTTGTGTAGAGACCTTGCGGGGAGACTTATTGA  662

Query  354  AATTAAAAAGAAAGAAAAGTCGACGAGACGACTTGGGGAGAGG-AATATGGCAGAGGAGG  412
            ||| ||||||| ||||| | ||||||||||||| |||| |||| || ||||||||| |||
Sbjct  663  AATGAAAAAGAGAGAAAGGGCGACGAGACGACTGGGGGTGAGGGAA-ATGGCAGAGAAGG  721

Query  413  CTGAGTCGTCTACTGGTGATAATGGTGACGATGTTGTACACACAGCAAGAACCCGTTTAT  472
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  722  CTGAGTCGTCTACTGGTGATAATGGTGACGATGTTGTAGACACAGCAAGAACCCGTTTGT  781

Query  473  GCAAACGTCGCCGTCTTTGA  492
            ||||||| ||||||||||||
Sbjct  782  GCAAACGACGCCGTCTTTGA  801



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5