BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316514
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75880.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1520 0.0
AT1G75890.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1033 0.0
AT1G75891.1 | Symbols: | other RNA | chr1:28493304-28494161 RE... 145 2e-33
> AT1G75880.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr1:28490449-28492464 FORWARD LENGTH=1409
Length=1409
Score = 1520 bits (823), Expect = 0.0
Identities = 955/1018 (94%), Gaps = 11/1018 (1%)
Strand=Plus/Plus
Query 1 ATGGAACGACGTGGTTCTGGTCATCTTCGCATCAATTCTTATTTTTGTCCCTCTTCTTCG 60
||||||||| || |||||||||||| |||||||| |||||| || || ||||||||||
Sbjct 116 ATGGAACGATGTCGTTCTGGTCATCATCGCATCATTTCTTA---TTATCTCTCTTCTTCG 172
Query 61 ACGATACCGTTTTGGCGTACTTTCTTTCTCGTGCTGTTATTTACGAC-A--ACTACAAAT 117
||||| |||||| ||| |||| ||||||||||||||| |||||| | |||||||||
Sbjct 173 TTGATACTATTTTGGTGTATTTTCGTTCTCGTGCTGTTATCTACGACAAGTACTACAAAT 232
Query 118 GCTTTAGTGAAAATCCCAAAAAACACGACCGTCCCGGCAGTAATAGTGTTTGGAGATTCA 177
||||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 233 GCTTTAGTGAAAATCCCGAAAAACACGACCGTTCCGGCGGTAATAGTGTTCGGTGATTCA 292
Query 178 ATTGTCGATGCCGGAAATAACGACGACATGATAACAGAAGCTAGATGCGATTATGCTCCC 237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATTGTCGATGCCGGGAATAACGACGACATGATAACAGAAGCTAGATGCGATTATGCTCCC 352
Query 238 TACGGCATTGATTTTGACGGTGGAGTTGCTACCGGAAGATTCTCCAATGGCAAAGTCCCC 297
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 353 TACGGCATTGATTTTGACGGTGGAGTTGCTACGGGAAGATTCTCTAATGGCAAAGTCCCT 412
Query 298 GGTGATATTGTAGCGGAAGAGCTAGGGATTAAACCCAATATACCGGCATACCGAGATCCA 357
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 413 GGTGATATTGTAGCGGAAGAGCTAGGGATTAAACCCAATATACCGGCATATCGAAATCCG 472
Query 358 AATTTAAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCTTCTGGTGGCGCTGGTTAC 417
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 473 AATTTAAAACCAGAAGAGCTCTTAACCGGTGTAACATTTGCTTCTGGTGGTGCTGGTTAT 532
Query 418 GTTCCTTTGACGACCAAAATAGC-G--GGAGGAATACCTTTACCACAACAATTGAAATAT 474
||||||||||| ||||||||||| | |||||||||||||||||||| ||||||| ||||
Sbjct 533 GTTCCTTTGACAACCAAAATAGCGGTAGGAGGAATACCTTTACCACAGCAATTGATATAT 592
Query 475 TTTGAAGAATATATAAAGAAATTGAAGGGAATGGTTGGAGAAGAA-AGGACAAAGTTCAT 533
||||| ||||||||| ||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 593 TTTGAGGAATATATAGAGAAATTGAAGCAAATGGTTGGAGAA-AAGAGGACAAAGTTCAT 651
Query 534 AATCAAGAATAGCTTGTTCGTTGTTATATGTGGTAGTAACGATATCGTCAACGACTTCTT 593
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 652 AATCAAGAATAGCTTGTTCGTTGTTATATGTGGTAGTAACGATATCGCCAACGACTTCTT 711
Query 594 TGCTCTCCCTCCGGTTCAGCTCCACTACACCGTCGCTTCTTTCACCGCTCTTATGGCCGA 653
| ||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 712 TACTCTCCCCCCGGTCCGGCTACACTACACCGTCGCTTCTTTCACCGCTCTTATGGCCGA 771
Query 654 CAATGCTCGCTCTTTTGCTCAGACGCTCTATGGATATGGAGCAAGAAGAATACTTGTATT 713
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 CAATGCTCGTTCTTTTGCTCAGACACTCTATGGATATGGAGCAAGAAGAATACTTGTATT 831
Query 714 TGGTGCACCACCAATAGGATGTGTTCCTTCGCAGAGAACCGTAGCAGGAGGACCTACAAG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGGTGCACCACCAATAGGATGTGTTCCTTCGCAGAGAACCGTAGCAGGAGGACCTACAAG 891
Query 774 AGAATGTGTTGCTAGGTTCAATGATGCATCAAAACTTTTCAATACTAAACTCTCTGCTAA 833
||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 892 AGATTGTGTTGCTAGGTTTAATGATGCAGCAAAACTTTTCAATACTAAGCTCTCTGCAAA 951
Query 834 TATTGATGCCTTGTCAAGGACTCTACGAGACCCAACAATAATCTATATTGACATCTATAG 893
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 952 TATTGATGTCTTGTCAAGGACTCTACAAGACCCAACAATAATCTATATTGACATCTATAG 1011
Query 894 TCCTCTTCTTGATCTCATTTTAAATCCTCATCAATATGGATTTAAGGTGGCCAATAAAGG 953
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1012 TCCTCTTCTTGATCTCATTTTAAACCCTCATCAATATGGATTTAAGGTGGCCAATAAAGG 1071
Query 954 ATGTTGCGGAACCGGATTAATAGAAGTTACTGCGCTATGCAACAACTATACAGCTTCT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATGTTGCGGAACCGGATTAATAGAAGTTACTGCGCTATGCAACAACTATACAGCTTCT 1129
> AT1G75890.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:28493051-28495047 FORWARD LENGTH=1140
Length=1140
Score = 1033 bits (559), Expect = 0.0
Identities = 636/674 (94%), Gaps = 2/674 (0%)
Strand=Plus/Plus
Query 1350 GGGAGGAATAGCTTTATCGCAGCAATTGAAATTATTCGAACAGTATATAGAGAAGTTGAA 1409
||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||
Sbjct 468 GGGAGGAATAGCTTTATCGCAGCAACTGAAGTTATTCGAAGAGTATGTAGAGAAGATGAA 527
Query 1410 GGAAATGGTTGGGGAAGAAAGGACAACGTTCATAATTAAAAACAGTTTGTTCATGGTTAT 1469
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 528 GAAAATGGTTGGGGAAGAAAGGACAAAGCTCATAATTAAAAACAGTTTGTTCATGGTTAT 587
Query 1470 ATGTGGCAGTAATGATATAACCAACACCTACTTTGGTCTTCCTTCTGTTCAACACCAATA 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 588 ATGTGGCAGTAATGATATAACCAACACCTACTTTGGTCTTCCTTCTGTTCAACAACAATA 647
Query 1530 CGATGTCGCTTCCTTTACTACTCTTATGGCCGACAATGCTCGATCTTTTGCTCAAAAATT 1589
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CGACGTCGCTTCCTTTACCACTCTTATGGCCGACAATGCTCGATCTTTTGCTCAAAAATT 707
Query 1590 ACATGAGTATGGAGCGAGAAGAATCCAAGTATTCGGTGCACCACCACTCGGATGTGTCCC 1649
|||||| ||||||||||| ||||| ||||||||||||||||||||| | |||||||||||
Sbjct 708 ACATGAATATGGAGCGAGGAGAATACAAGTATTCGGTGCACCACCAGTAGGATGTGTCCC 767
Query 1650 ATCACAGAGAACCTTAGCAGG-GGGACCAACGAGAAATTGTGTTGTTAGGTTCAATGATG 1708
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 768 ATCACAGAGAACCTTAGCAGGAGGG-CCAACAAGAAATTGTGTTGTTAGGTTCAATGATG 826
Query 1709 CAACAAAGCTCTACAATGCTAAGCTCGCTGCAAATTTGGAATCTTTGTCAAGAACTTTAG 1768
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 827 CAACAAAGCTCTACAATGTTAAGCTCGCTGCAAATTTGGGTTCTTTGTCAAGAACTTTAG 886
Query 1769 GAGAGAAGACAATAATCTACGTTGATATATATGATTCTCTTTTTGATATCATTCTAGACC 1828
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 887 GAGACAAGACAATAATCTACGTTGACATATATGATTCTCTCCTTGATATCATTCTTGACC 946
Query 1829 CTCAACAATATGGATTTAAGGTGGTCGATAGAGGATGTTGTGGAACCGGACTAATTGAAG 1888
||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 947 CTCGACAATATGGATTTAAGGTGGTTGATAAAGGATGTTGTGGAACTGGACTAATTGAAG 1006
Query 1889 TTACTGTATTATGCAACAACTTTGCAGCTGATGTATGTCAAAATAGAGATGAATATGTGT 1948
|| || | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1007 TTGCTCTTTTATGCAACAACTTTGCAGCTGATGTATGTCCAAATAGAGATGAATATGTGT 1066
Query 1949 TTTGGGATAGTTTCCATCCGACTGAGAAGACTTACAGAATTATGGCGACGAAATATATTG 2008
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1067 TTTGGGATAGTTTCCATCCGACTGAGAAGACTTACAGAATTATGGCCACAAAATATTTTG 1126
Query 2009 AGAGATATGTATGA 2022
||||||||||||||
Sbjct 1127 AGAGATATGTATGA 1140
Score = 532 bits (288), Expect = 4e-150
Identities = 322/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 1012 ACGACCACGAACGCTTTGGTGAAGCTTCCGCCAAACGAAACGATTCCGGCGATCATAGTG 1071
||| |||| |||||||||||||||| |||||||||||||||| ||||||||| || |||
Sbjct 91 ACGTCCACCAACGCTTTGGTGAAGCAGCCGCCAAACGAAACGACTCCGGCGATAATTGTG 150
Query 1072 TTCGGAGATTCGATCGTCGATGCCGGAAATAATGACGACATTATGACAACGTTGGCTAGA 1131
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 TTCGGAGATTCAATCGTTGATGCCGGAAATAATGACGACATTATGACAACGTTGGCTAGA 210
Query 1132 TGCAATTATCCTCCTTACGGCATCGATTTTGACGGTGGAATTCCTACCGGAAGATTTTCC 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 211 TGCAATTATCCTCCTTACGGCATCGATTTTGACGGTGGAATTCCTACCGGAAGATTTTGC 270
Query 1192 AACGGCAAAGTTGCGACTGATTTTATAGCGGAAAAATTCGGAATTAAACCAACTATACCG 1251
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 271 AACGGCAAAGTTGCGACTGATTTTATAGCGGGAAAATTCGGAATTAAACCAAGTATACCG 330
Query 1252 GCCTACCGAAATCCAAATTTGAAACCAGACGATCTCTTAACCGGTGTAACATTTGCGTCT 1311
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 331 GCATATCGAAATCCAAATTTGAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCGTCT 390
Query 1312 GGCGGTGCTGGTTACGTTCCCTTCACGACCCAATTATCG 1350
|| ||||||||||||||||||||||| ||||||||||||
Sbjct 391 GGTGGTGCTGGTTACGTTCCCTTCACAACCCAATTATCG 429
Score = 302 bits (163), Expect = 1e-80
Identities = 318/390 (82%), Gaps = 22/390 (6%)
Strand=Plus/Plus
Query 54 TTCTTCGACGATACCGTTTTGGCGTACTTTCTTTCTCGTGCTGTTATTTACGACAACTAC 113
|||||||| | | ||||||||| || ||||||||||||| |||||| || ||| | ||
Sbjct 42 TTCTTCGA-G-T-CCGTTTTGGTGTGTTTTCTTTCTCGTGTTGTTATGTAAGACGTCCAC 98
Query 114 AAATGCTTTAGTGAA--AATC-CCAAA-AAACACGACCGTCCCGGCAG-TAATAGTGTTT 168
|| ||||| ||||| | | ||||| || |||| | | ||||| | |||| |||||
Sbjct 99 CAACGCTTTGGTGAAGCAGCCGCCAAACGAA-ACGA-C-T-CCGGC-GATAATTGTGTTC 153
Query 169 GGAGATTCAATTGTCGATGCCGGAAATAACGACGACATGATAAC-A-G-AAGCTAGATGC 225
||||||||||| || |||||||||||||| |||||||| || || | | |||||||||
Sbjct 154 GGAGATTCAATCGTTGATGCCGGAAATAATGACGACATTATGACAACGTTGGCTAGATGC 213
Query 226 GATTATGCTCCCTACGGCATTGATTTTGACGGTGGAGTTGCTACCGGAAGATTCTCCAAT 285
||||| |||| |||||||| ||||||||||||||| || ||||||||||||| | |||
Sbjct 214 AATTATCCTCCTTACGGCATCGATTTTGACGGTGGAATTCCTACCGGAAGATTTTGCAAC 273
Query 286 GGCAAAGTCCCCG-GTGATATTGTAGC-GGAAGAGCTAGGGATTAAACCCAA-TATACCG 342
|||||||| || |||| || |||| |||| | | || |||||| |||| |||||||
Sbjct 274 GGCAAAGT-TGCGACTGATTTTATAGCGGGAA-AATTCGGAATTAAA-CCAAGTATACCG 330
Query 343 GCATACCGAGATCCAAATTTAAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCTTCT 402
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 331 GCATATCGAAATCCAAATTTGAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCGTCT 390
Query 403 GGTGGCGCTGGTTACGTTCCTTTGACGACC 432
||||| |||||||||||||| || || |||
Sbjct 391 GGTGGTGCTGGTTACGTTCCCTTCACAACC 420
> AT1G75891.1 | Symbols: | other RNA | chr1:28493304-28494161
REVERSE LENGTH=351
Length=351
Score = 145 bits (78), Expect = 2e-33
Identities = 141/169 (83%), Gaps = 14/169 (8%)
Strand=Plus/Minus
Query 1250 CGGCCTACCGAAATCCAAATTTGAAACCAGACGATCTCTTAACCGGTGTAACATTTGCGT 1309
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 171 CGGCATATCGAAATCCAAATTTGAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCGT 112
Query 1310 CTGGCGGTGCTGGTTACGTTCCCTTC--ACG-AC---CCAAT-TA-T-C-----GGGAGG 1355
|||| |||||||||||||||||||| | | ||| | | | | ||||||
Sbjct 111 CTGGTGGTGCTGGTTACGTTCCCTTTTTATATATAAACCATTGTTGTTCTTAAAGGGAGG 52
Query 1356 AATAGCTTTATCGCAGCAATTGAAATTATTCGAACAGTATATAGAGAAG 1404
||||||||||||||||||| |||| ||||||||| ||||| ||||||||
Sbjct 51 AATAGCTTTATCGCAGCAACTGAAGTTATTCGAAGAGTATGTAGAGAAG 3
Score = 124 bits (67), Expect = 3e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 341 CGGCATACCGAGATCCAAATTTAAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCTT 400
||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 171 CGGCATATCGAAATCCAAATTTGAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCGT 112
Query 401 CTGGTGGCGCTGGTTACGTTCC-TTT 425
||||||| |||||||||||||| |||
Sbjct 111 CTGGTGGTGCTGGTTACGTTCCCTTT 86
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 1175 CTACCGGAAGATTTTCCAACGGCAAAGTTGCGACTGATTTTATAG 1219
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 351 CTACCGGAAGATTTTGCAACGGCAAAGTTGCGACTGATTTTATAG 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100200287820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5