BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316527
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76065.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 392 7e-109
> AT1G76065.1 | Symbols: | LYR family of Fe/S cluster biogenesis
protein | chr1:28544338-28545376 REVERSE LENGTH=874
Length=874
Score = 392 bits (212), Expect = 7e-109
Identities = 232/242 (96%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 1 ATGGTCCAATTGGATCTGCAGAGCTTTATCCTCCGGGCTCGAGTGCTTAAACTCTACCGA 60
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 71 ATGGTTCAATTAGATCTGCAGAGCTTTATTCTCCGGGCTCGAGTGCTTAAACTTTACCGA 130
Query 61 CAAGCATTGAAGATAGCTCACAGAGCTCCTGTTCATGTTAGAGGGGAATTGAAACAGACT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 131 CAAGCATTGAAGATAGCTCACAGAGCTCCTGTTCATGTTAGAGGGGAACTGAAACAGACT 190
Query 121 GTTAGGCAAGAGATGGAAAAGAACAGAGACTGTGACGACAAACAAAAGATTCGGTATCTG 180
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 191 GTTAGGCAAGAGATGGAAAAGAACAGAGACTGCAATGACAAACAAAAGATTCGGTATCTG 250
Query 181 ATTAGTGAAGGTTTAGAGAGAATTAAAGGACTTGATGAGATGTTGGATATGCAAGGCCAT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 251 ATTAGTGAAGGTTTAGAGAGAATCAAAGGACTTGATGAGATGTTGGATATGCAGGGCCAT 310
Query 241 TA 242
||
Sbjct 311 TA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5